Microbial Evolution

Early cellular life began under the harsh conditions of early Earth, where simple chemicals could form more complex organic molecules. Experimental evidence supports the idea that RNA nucleotides, amino acids, and lipids could arise spontaneously in this environment. Volcanic activity, strong UV radiation, and an atmosphere with little or no free oxygen likely helped drive these reactions.

Hydrothermal vents on the ocean floor are considered one likely setting for the first life forms. These...

Photosynthesis changed Earth’s atmosphere and made complex life possible. It began about 3.4 to 3.8 billion years ago, when the first photosynthetic organisms used light energy to build organic compounds. These early organisms were anoxygenic phototrophs, which means they made food from light but did not release oxygen.

Early photosynthesis used hydrogen sulfide (H2S) or ferrous iron (Fe2+) as electron donors instead of water. Because of that, it did not produce molecular oxygen (O2) as a...

Microbes gain new traits through fast genetic change. Their short generation times help evolution happen quickly. Mutation, horizontal gene transfer, recombination, and genetic drift all contribute to this process. Together, these mechanisms help microbial populations adjust to changing environments.

Horizontal gene transfer, or HGT, moves genes between different species. It happens in three main ways: conjugation, transformation, and transduction. Conjugation requires direct cell-to-cell...

Microbial adaptation in changing environments can happen very quickly. Microorganisms often evolve fast because they have large population sizes and short generation times. In the lab, these changes can sometimes be measured within days.

Natural selection acts on standing genetic variation, which is the genetic diversity already present in a population. When conditions change, helpful traits can be kept and increased because they improve fitness. This lets microbes respond to new pressures...

Microbial genomes change through gene gain and gene loss. These changes help microbes adapt to new environments and to other organisms they live with. In many species, genome evolution is fast and ongoing.

A key idea is the difference between the core genome and the pan-genome. The core genome is the set of genes shared by all sampled strains of a species. These genes support basic cell functions. For example, Salmonella enterica has about 2,800 core genes, although the exact number can change...

Reading microbial family trees helps scientists study how microorganisms are related. These trees are important in microbial ecology and taxonomy. They use molecular sequences such as DNA, RNA, or proteins to compare bacteria and archaea and trace genetic changes over time.

A phylogenetic tree has tips, branches, and nodes. The tips are the species that are sampled or still alive. The branches show evolutionary paths, and branch length reflects the number of genetic changes between nodes.

The phylogenetic species concept helps define microbial species by looking at DNA and evolutionary relatedness. It focuses on shared ancestry and genetic traits that can be diagnosed in different organisms. This approach is especially useful in microbiology, where other species concepts often do not work well.

Traditional morphological and biological species concepts rely on body form or reproduction. Those methods can fall short for microbes because many reproduce asexually, show little...