Method Article

Development of a Zebrafish Larval Infection Model Using Microgavage

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March 31st, 2026

In This Article

Abstract

Source: Li, J., et al. Development of a Larval Zebrafish Infection Model for Clostridioides difficile. J. Vis. Exp. (2020).

This video demonstrates the microgavage procedure, where an anesthetized zebrafish larva is immobilized in agarose and orally injected with a pathogenic bacterium using a tracer-guided needle. The non-invasive delivery mimics natural infection, enabling analysis of bacterial replication, toxin release, and intestinal epithelial damage.

Protocol

1. Gavage of Zebrafish Larvae

  1. Calibrate the microgavage needle.
  2. Measure the diameter of the tip of the needle by placing the needle on a calibration slide with one drop of mineral oil. Ensure that the tip is 30–40 µm in diameter, blunt, and smooth. Discard the sharp or rough needles.
    NOTE: Sharp edges of needles can be blunted by quick flaming.
  3. Prepare the gavage solution.
  4. Load and mount the needle onto a micromanipulator.
  5. Adjust the micromanipulator to position the needle at a 45° angle.
  6. Anesthetize the zebrafish larvae. When the larvae stop moving, transfer them to the groove of a microgavage mold using a Pasteur pipette.
  7. Place a drop of 0.8% low melting agarose onto the zebrafish larvae to cover. Gently adjust the larvae with heads facing upright at 45° angles in the groove and tails against the wall of the groove. Ensure that the angles of the heads are approximately the same so that they are aligned with the angle of the gavage needles. Place the microgavage mold on ice for 30–60 s, allowing the low-melting agarose to solidify in order to stabilize the positions of the larvae.
  8. Adjust the injection pressure between 200–300 hPa. Set the injection time to 0.1–0.3 s to obtain an injection volume of 3–5 nL of Clostridioides difficile.
  9. Gently operate the needle through the agarose, then into the mouth of zebrafish larvae, through the esophagus. Once the tip of the needle is inside the anterior intestinal bulb, press the injection pedal to release the bacteria. Fill the lumen of the intestine with the delivered volume. Do not let it overflow from the esophagus or cloaca. Gently withdraw the needle from the mouth of the zebrafish.
  10. Following gavage, rescue the infected zebrafish larvae from the agarose with a flexible microloader tip by first cutting the agarose away then by lifting the larvae. Transfer these larvae into sterile 30% Danieau's medium. Rinse the larvae in sterile medium twice. Transfer the larvae to a fresh 10 cm Petri dish. The larvae will be maintained for up to 11 days post fertilization (dpf).

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
AgaroseSigma-AldrichA2576Ultra-low gelling agarose
Agarose low-melting (LM)Pronadisa8050It is used in agarose plates
Capillary GlassHarvard Apparatus30-0019Injection needles
Clostridioides difficile  R20291,, a ribotype 027 strain, TcdA+/TcdB+/CDT+ production
DMSOCarl Roth GmbHA994 
FIJIopen-source platform Image processing
HEPESCarl Roth GmbH6763 
Horizontal needle pullerSutter instrument IncP-87 
L-cysteineSigma-Aldrich168149 
Leica Application Suite X (LAS X)Leica Image processing
Micro injectoreppendorf5253000017 
Microinjection moldsAdaptive Science ToolsTU1 
Leica SP8 confocal microscopeLeica  
Phenol RedSigma-AldrichP0290 
Potassium chloride (KCl)Carl Roth GmbH5346 
Sodium chloride (NaCl)Carl Roth GmbH9265 
TaurocholateCarl Roth GmbH8149 
TricaineSigma-AldrichE10521 
Yeast extractBD Bacto212750 

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Tags

Zebrafish LarvaMicrogavage ProcedureBacterial Infection ModelClostridioides difficileAnesthetized ZebrafishAgarose ImmobilizationStereomicroscope GuidanceIntestinal InjectionTracer Dye ConfirmationNon invasive Delivery

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