| Drosophila stocks | | | |
| Ubiquitous GFP-tagged E-cadherin;Ubi-p63E-shg.GFP; (chrII) | Kyoto Stock Center, DGRC | #109007 | Ubi-p63E promoter sequences drive the expression of Drosophila E-cadherin (shotgun) tagged at the C-terminal end with GFP. |
| Ubiquitous GFP-tagged E-cadherin;;Ubi-p63E-shg.GFP (III) | Bloomington Drosophila Stock Centre (Indiana University) | #58742 | Ubi-p63E promoter sequences drive the expression of Drosophila E-cadherin (shotgun) tagged at the C-terminal end with GFP. |
| Ubiquitous GFP-tagged Moesin P{sGMCA}3.1 | Bloomington Drosophila Stock Centre (Indiana University) | #59023 | The ubiquitously expressed sqh promoter/enhancer drives expression of a fragment of Moesin (that includes the actin binding sequences) tagged with GFPS65T. |
| Hemocyte specific serpent-Gal4 driver ;srp-Gal4; | Generated by Katja Bruckner | Generated by Katja Bruckner | The expression of Scer\GAL4 fused to a polyA tail is controlled by 2 genomic sequences from upstream of Drosophila serpent. Ref: Brückner, K., Kockel, L., Duchek, P., Luque, C.M., Rørth, P., Perrimon, N. The PDGF/VEGF receptor controls blood cell survival in Drosophila. Dev Cell. 7 (1), 73–84, doi: 10.1016/j.devcel.2004.06.007 (2004). |
| UAS-nuclearRFP w1118;;P{UAS-RedStinger}6 | Bloomington Drosophila Stock Centre (Indiana University) | #8545 or #8547 | UAS regulatory sequences drive expression of the DsRed.T4 form of RFP which is tagged at the C-terminal end with a nuclear localisation signal |
| UAS-cytoplasmicGFP ;;P{UAS-GFP.S65T} | Bloomington Drosophila Stock Centre (Indiana University) | Multiple stocks available (e.g. #1522) | Expression of the S65T version of GFP by UAS regulatory sequences; the S65T variant exhibits increased brightness. |
| UAS-photoconvertibleKaede w1118;; P{UAS-Kaede.A}3 | Bloomington Drosophila Stock Centre (Indiana University) | #26161 | Kaede protein emits bright green fluorescence after synthesis, but changes efficiently to a bright stable red fluorescence on irradiation with UV. |
| GFP-tagged spaghetti squash w1118;;P{sqh-GFP.RLC} | Bloomington Drosophila Stock Centre (Indiana University) | #57145 | The sqh coding region, which is tagged at the C-terminal end with a T:Avic\GFPS65T tag, is expressed under the control of the natural sqh promoter. |
| Ingredients for fly food media | | | Fly food media is made according to standard procedures (see Greenspan, R. 1997. Fly Pushing: The Theory and Practice of Drosophila Genetics. Cold Spring Harbor Press. 1-191 pp.) |
| Maize | Wild Oats, Bristol, UK (or equivalent supplier) | Contact supplier direct | organic |
| Soya flour | Wild Oats, Bristol, UK (or equivalent supplier) | Contact supplier direct | organic |
| Malt extract | Wild Oats, Bristol, UK (or equivalent supplier) | Contact supplier direct | organic |
| Molasses | Wild Oats, Bristol, UK (or equivalent supplier) | Contact supplier direct | organic |
| Difco agar | BD Biosciences, Fisher Scientific | DF0142-15-2 | For preparation of fly food |
| Propionic acid | Sigma | 402907 | For preparation of fly food |
| Nipagen | Sigma | 79721 | For preparation of fly food |
| Dried baker's yeast | Redstar, Dutscher Scientific, UK LTD | Redstar, Dutscher Scientific, UK LTD | For preparation of fly food |
| Sample preparation and mounting | | | |
| Parafilm | Sigma | P7793-1EA | For preparation of heptane glue |
| Fine sable paintbrush | Daler-Rowney (or equivalent) | #0 or 1 | |
| Forceps | Fisher Scientific (or Fine Science Tools) | NC9404145 | Dumont #5 |
| Glass bottomed dishes for imaging | MatTek | P35G-0-10-C | We suggest using 35mm petri dishes, with at least a 10mm Microwell, 0.085-0.13mm cover glass, uncoated. Dishes with larger microwells will enable increasing numbers of pupae to be mounted and imaged in a single experiment. |
| Heptane | Sigma | 51730-5ML | For preparation of heptane glue |
| Double sided sticky tape (e.g. Scotch) | Agar Scientific | AGG263 | For preparation of heptane glue |
| 50ml tube (for heptane glue) | Falcon tubes from Fisher Scientific | 14-432-22 | For preparation of heptane glue |
| Glass microscope slides | Agar Scientific | AGL4244 | For dissection of Drosophila pupae |
| Dissecting stereo microscope with brightfield | Leica (or equivalent) | M50 | For dissection of Drosophila pupae |
| Microscissors | John Weiss International | 103123 | Miniature Research Scissors (straight) |
| Laser ablation and imaging | | | |
| Nitogen ablation laser | Spectra-Physics (or Andor equivalent) | Model VSL-337ND-S | For wounding, this should be attached to a widefield imaging system |
| Multilaser confocal laser-scanning microscope (CLSM) | Leica (or equivalent) | TCS AOBS SP8 or SP5-II attached to a Leica DMi8 inverted epifluorescence microscope (or equivalent) | Ideally including a motorised stage for multi-site and 'mosaic' scanning, plus 'hybrid' GaAsP detectors (that offer much greater sensitivity and boosting of low signal) |
| Environmental chamber | Life Imaging Services (or equivalent) | "Microscope Temperature Control System" | Attached to Confocal microscope for temperature control during imaging |
| Image Analysis Software | | | |
| FRAP software module | Leica (or equivalent) | CLSM FRAP software module | For performing photoconversion of photoconvertible fluorophores such as Kaede |
| ImageJ (image analysis software) | National Institutes of Health (NIH) | https://imagej.nih.gov/ij/ | Schneider, C.A., Rasband, W.S., Eliceiri, K.W. "NIH Image to ImageJ: 25 years of image analysis". Nature Methods 9, 671-675, 2012. |
| ImageJ plugin "Manual Tracking" | National Institutes of Health (NIH) | https://imagej.net/Manual_Tracking | |
| ImageJ plugin "TrackMate" | ImageJ, NIH | https://imagej.net/TrackMate | Tinevez, JY.; Perry, N. & Schindelin, J. et al. (2016), "TrackMate: An open and extensible platform for single-particle tracking.", Methods 115: 80-90, PMID 27713081 |
| Volocity (high performance 3D imaging software) | Perkin Elmer | Volocity 6.3 | For image analysis |
| IMARIS (image analysis software) | Bitplane | IMARIS for Cell Biologists | For image analysis |