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1. Generation of uniform size tumor spheroids
NOTE: Stem-like cells are cultured in neurobasal medium complemented with B27 supplement, heparin, Fibroblast growth factor 2 (FGF-2), penicillin, and streptomycin. These cells spontaneously form spheroids in culture.
- Wash the tumor cells with 5 mL phosphate-buffered saline (PBS) and incubate the cells with 0.5-1 mL dissociation enzyme for 5 minutes at 37 °C.
- Wash with 4-4.5 mL PBS and add 10 mL of the complete growth medium (complete neurobasal medium, cNBM).
- Count the cells using an automatic counting technique with trypan blue and a cell counting chamber slide.
- To generate 100 spheroids with 104 cells per spheroid (according to preferred size), mix 106 cells in 8 mL of NBM with 2 mL of 2% methylcellulose.
- Transfer the suspension to a sterile system container and dispense 100 µL/well with a multichannel pipette into a 96 well round bottom plate.
- Incubate the plate at 37 °C, 5% CO2 and 95% humidity. Equal sized spheroids will form and can be used after 3-4 days.
2. Three-dimensional experiments
- Invasion
- Preparation
- Prepare the collagen matrix in a tube on ice with type I collagen at 1 mg/mL final concentration, 1x PBS, 0.023xVcollagen, 1 M sodium hydroxide, and sterile H2O. Incubate the solution on ice for 30 min.
- Collect spheroids from the round bottom well plate in 500 µL tubes and wash 2x with 200 µL 1x PBS.
- Pipette the spheroids carefully into 100 µL of the collagen matrix and insert in the center of a well in normal 96 well plates.
- Incubate the collagen gel for 30 min at 37 °C and then add cNBM on top of the gel. Inhibitors or activators (e.g., hydrogen chloride as shown in Figure 1B, 1C) can be added to the medium at this step.
- Image acquisition and analysis
- Take pictures sequentially with a video microscope in brightfield mode 24 h after collagen inclusion.
- Use Fiji to analyze pictures either manually or in a semiautomated manner. To do so manually, draw around the core and the total area of the spheroid with the freehand selection tool and measure the invasive area of each spheroid by subtract total area with core area. To analyze the images in a semiautomated manner, use a macro to determine the invasive area.