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Method Article

Two-Photon Microscopy of Astrocytes and Excitatory Neurons in a Cleared Mouse Hippocampal Tissue

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May 29th, 2025

In This Article

Abstract

Source: Refaeli, R., et al., Investigation of Spatial Interaction Between Astrocytes and Neurons in Cleared Brains. J. Vis. Exp. (2022)

The video demonstrates the preparation of a chamber and the neuroimaging of cleared mouse hippocampal tissue using two-photon microscopy to visualize the spatial interactions between fluorescently labeled astrocytes and excitatory neurons.

Protocol

All procedures involving animal samples have been reviewed and approved by the appropriate animal ethical review committee.

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Results

Hydrogel sealing process; sequence of steps in lab setup for cell culture experiment.

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
AAV1-GFAP::TdTomatoELSC Vector Core Facility (EVCF) Viral vector used to detect astrocytes
AAV5-CaMKII::eGFPELSC Vector Core Facility (EVCF) Viral vector used to detect neurons
AAV5-CaMKII::H2B-eGFPELSC Vector Core Facility (EVCF) Viral vector used to detect neuronal nuclei
AAV5-CaMKII::TdTomatoELSC Vector Core Facility (EVCF) Viral vector used to detect neurons
Imaris softwareBitplane, UK A software that allows 3D analysis of images
RapiClearSunJin lab#RC147002
RapiClear CSSunJin lab#RCCS002
SyGlass software A software that allows 3D analysis of images using virtual reality
Two photon microscopeNeurolabware Ti:sapphire laser (Chameleon Discovery TPC, Coherent), GaAsP photo-multiplier tubes (Hamamatsu, H10770-40) , bandpass filter (Semrock), water immersion 16x objective (Nikon, 0.8 NA)
VA-044 InitiatorWako#011-19365

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