On the "Acquisition Mode" tab, set the "Frame Size" at 256 x 256. Click "Live" and observe the neurons of interest.
Starting from the dorsal-most side, find a focal plane in which the cells to be ablated are in focus.
Mark a small, circular area about one third the cell's size in diameter on each neuron as a region of interest (ROI) using the "Regions" function.
Set the scan speed to 13.93 s/256 x 256 pixels (134.42 µm x 134.42 µm), which corresponds to a laser dwell time of approximately 200 µs/pixel, or 200 µs/0.5 µm. Also, set 4 repetitions ('Iteration cycle: 4'). Alternatively, optimize the number of iterations and scanning speed so that sufficient ablation is achieved.
Perform the 'Bleaching' function for ablation, in combination with the 'Time series (2 cycles)' to image the sample (before and after ablation) and 'Regions' (to set the ROIs) or equivalent functions in the software used(Figure 1D) .
By comparing the first image (before ablation) and the second image (after ablation) in the Time series cycle, ensure that after bleaching, the fluorescence in the targeted cells decreases to that observed at the background level (Figure 2B).
If fluorescence is still present after ablation, increase the number of iterations.
Next, move the focal plane slightly deeper (i.e., towards the ventral side), and choose the next focal plane where un-ablated cells appear.
Perform the bleaching function. Repeat these steps until all the cells in the neural structure of interest have been ablated.
After going through all the focal planes covering the neural structures to be ablated, check the cells for abolished fluorescence. If some cells are found to still be fluorescent due to insufficient ablation, laser-irradiate them again as described above.
If the larva needs to be recovered from agarose after laser irradiation, do not try to force it out of the agarose because this might damage the larva. Instead, carefully make tiny cuts in the agarose around the larva perpendicularly to the surface of its body. Then, wait for the larva to swim out of agarose on its own when the anesthetic wears off.
Proceed to the next larva for ablation or perform control experiments using another population of neurons that are uninvolved in the behavior under investigation.
NOTE: Here, as a control, olfactory bulb neurons in UAS:EGFP; gSAIzGFFM119B larvae were laser-ablated using the same protocol described above (Figure 2A, right).
Allow several hours or 1 day for recovery before proceeding to Ca imaging or behavioral recording. During this recovery time, check the larval health (i.e., normal spontaneous swimming, no apparent heat damage around the ablated area, etc.) and remove larvae showing any signs of poor health.