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1. Differential Interference Contrast (DIC) Time-lapse Microscopy of Axon Branching
Note: While this protocol utilizes DIC, other transmitted light microscopy methods may be used for the same purposes (for example: phase contrast).
- At 2 days in vitro (DIV), place glass bottom imaging dish containing untransfected neurons in pre-warmed environmental chamber to maintain a humid environment with 5% CO2 and 37 °C. Utilize a microscope equipped with a 60X Plan-Apochromat, 1.4 numerical aperture (NA) DIC objective lens and high NA condenser for best image quality and resolution.
- Adjust the focal plane to find neurons through the oculars using transmitted light illumination.
- Using the multi area acquisition function on imaging software, find and save the XYZ locations of at least 6 cells. Position the stage so that neurons of interest fit within the field of view for best results.
- Stimulate with 250 ng/ml netrin-1 and press 'start multi area acquisition'. Sequentially acquire images at each position every 20 sec for 24 hr, pausing acquisition and refocusing as necessary.
- Review images in imaging software using Apps>Review Multi Dimensional Data>open file name. Identify stable axon branches (20 µm long) that form during the imaging session. Use the line draw tool to measure a stable axon branch from the base of the axon to the tip to ensure the 20 µm length qualification is met.
- In a spreadsheet, record the frame number after netrin stimulation when membrane protrusions initiate in areas where branches later form, as well as the frame number after netrin stimulation when nascent branches reach 20 µm in length.
- Multiply the number of frames between protrusion and branch formation by 20 sec to calculate the formation time per branch.