Method Article

Real-Time In Vitro Imaging of Axonal Branching in Mouse Cortical Neurons

June 17th, 2025

In This Article

Abstract

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Source: Winkle, C. C., et al. Utilizing Combined Methodologies to Define the Role of Plasma Membrane Delivery During Axon Branching and Neuronal Morphogenesis. J. Vis. Exp. (2016)

This video demonstrates a live-imaging technique using differential interference contrast (DIC) microscopy to observe real-time axonal branching in cortical neurons. Time-lapse videos capture the effects of netrin-1 treatment, a signaling molecule that induces localized exocytosis and cytoskeletal rearrangements in axons. These processes initiate membrane protrusions, which develop into mature axonal branches, providing insights into neuronal development.

Protocol

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1. Differential Interference Contrast (DIC) Time-lapse Microscopy of Axon Branching

Note: While this protocol utilizes DIC, other transmitted light microscopy methods may be used for the same purposes (for example: phase contrast).

  1. At 2 days in vitro (DIV), place glass bottom imaging dish containing untransfected neurons in pre-warmed environmental chamber to maintain a humid environment with 5% CO2 and 37 °C. Utilize a microscope equipped with a 60X Plan-Apochromat, 1.4 numerical aperture (NA) DIC objective lens and high NA condenser for best image quality and resolution.
  2. Adjust the focal plane to find neurons through the oculars using transmitted light illumination.
  3. Using the multi area acquisition function on imaging software, find and save the XYZ locations of at least 6 cells. Position the stage so that neurons of interest fit within the field of view for best results.
    1. Stimulate with 250 ng/ml netrin-1 and press 'start multi area acquisition'. Sequentially acquire images at each position every 20 sec for 24 hr, pausing acquisition and refocusing as necessary.
  4. Review images in imaging software using Apps>Review Multi Dimensional Data>open file name. Identify stable axon branches (20 µm long) that form during the imaging session. Use the line draw tool to measure a stable axon branch from the base of the axon to the tip to ensure the 20 µm length qualification is met.
    1. In a spreadsheet, record the frame number after netrin stimulation when membrane protrusions initiate in areas where branches later form, as well as the frame number after netrin stimulation when nascent branches reach 20 µm in length.
    2. Multiply the number of frames between protrusion and branch formation by 20 sec to calculate the formation time per branch.

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
35mm Glass bottom live cell imaging dishesMatek Corporationp356-1.5-14-Cmust be coated with 1mg/mL Poly-d-lysine and rinsed prior to plating cells
Olympus IX81-ZDC2 inverted microscopeOlympus
Lambda LS xenon lampSutter Instruments Company
Environmental Stage top incubatorTokai Hit
100x 1.49 NA TIRF objectiveOlympus
Andor iXon EM-CCDAndor
Odyssey Licor Infrared Imaging SystemLI-COROdyssey CL-XUsed for scanning blots
Image studio software suiteLI-COR Used for scanning on the Odyssey Infrared system; Image studio lite used for offline analysis of blots
Metamorph for OlympusMolecular devices, LLCversion 7.7.6.0Software used for all imaging and the analysis of DIC timelapse
CELL TIRF control softwareOlympus Software used to control lasers for TIRF imaging
Fiji (Image J)NIHImageJ Version 1.49t
60x Plan Apochromat 1.4 NA objectiveOlympus
40x 1.4 NA Plan Apochromat objectiveOlympus
Neurobasal mediaGIBCO21103-049Base solution for both serum free and trypsin quenching media
Supplement B27GIBCO17504-044500ml/50mLs Serum free media and Trypsin Quenching media
L-Glutamine 35050-0611mL/50mLs Serum free media
Fetal bovine serumCorning/CELLGRO35-010-CV
Hank's Balanced Salt Solution (HBSS)Corning/CELLGRO20-021-CV
Poly-D-LysineSigmap-7886

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Tags

Axonal BranchingCortical NeuronsDIC MicroscopyLive ImagingTime Lapse ImagingNetrin 1 TreatmentExocytosisCytoskeletal RearrangementNeuronal DevelopmentMembrane Protrusions

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