Method Article

Visualization of Mouse Cerebral Thrombi Using Near-Infrared Fluorescence Imaging

June 17th, 2025

In This Article

Abstract

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Source: Kim, D. E., et al. Combined Near-infrared Fluorescent Imaging and Micro-computed Tomography for Directly Visualizing Cerebral Thromboemboli. J. Vis. Exp. (2016)

This video demonstrates near-infrared fluorescent (NIRF) imaging to visualize thrombi in excised brain tissue labeled with a fibrin-specific probe. Near-infrared light excites the probe, causing the thrombus to fluoresce, enabling high-contrast thrombi visualization in the major cerebral artery and small cortical blood vessels.

Protocol

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All procedures involving animal samples have been reviewed and approved by the appropriate animal ethical review committee.

1. Ex Vivo Near-infrared fluorescent (NIRF) Thrombus Imaging of the Brain Tissue

  1. After decapitation, remove the scalp and cut through the skull with scissors from the foramen magnum up toward the sagittal suture. Remove the cranial vault by carefully elevating the edges of the incised skull using scissors while avoiding injury to the underlying brain, thus laying bare the hemispheres.
  2. Cut out the optic nerves in the brain base as close as possible to the brain surface because they could overlap with the circle of Willis (COW) arteries that should be visualized on near-infrared fluorescent (NIRF) imaging. Then, to visualize the Y-shape 'middle cerebral artery (MCA) / anterior cerebral artery (ACA) / distal internal carotid artery (ICA)' for the NIRF thrombus imaging, cut out the distal ICAs as far as possible to the brain surface after gently compressing the cerebellar base to expose the cutting points (Figure 1A).
  3. Perform NIRF imaging (excitation/emission, 675 / 690 nm; 1-sec exposure) of the removed brain tissue with its base pointing up (Figure 1B, C), which visualizes the fluorescently labeled thromboemboli in the arteries of the COW (Figure 1D). Then, perform additional imaging with the vertex of the brain pointing up, which visualizes cortical thromboemboli. Avoid drying the brain by putting a few drops of saline on the tissue.

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Results

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Brain anatomy and NIRF imaging of compressed ICAs, showing brain tissue and imaging equipment.

Figure 1: Overview of Ex Vivo Near-Infrared Fluorescent (NIRF) Imaging of Cerebr...

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Machines
NIRF imaging systemRoper-scientific,Tucson, AZCoolsnap-Ez
Surgical microscopeLeica Microsystems, Seoul, KoreaEZ4HD
Software
Image J softwareWanye Rasband, NIH, USA1.49dImaging analysis
Micro forcepsFine Science Tools, Vancouver, Canada11253-27Dumont L5
Micro scissorFine Science Tools, Vancouver, Canada15000-03Vannas spring
ScissorFine Science Tools, Vancouver, Canada14084-088.5 cm
Black silk sutureAilee, Busan, KoreaSK6071, SK7286-0 and 7-0
Reagents
TTCAmresco, Ohio, USA0765-100g
C15 optical agent Synthesis

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Tags

Cerebral Thrombus VisualizationFibrin Specific Probe LabelingNear Infrared Light ExcitationMouse Brain Tissue ImagingThrombus Fluorescence DetectionCortical Blood Vessel ImagingCircle of Willis ArteriesEx Vivo Tissue ImagingHigh Contrast Thrombus Detection

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