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Method Article

In Vivo Imaging of Cerebrospinal Fluid Transport in a Mouse Brain Using Fluorescence Macroscopy

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June 17th, 2025

In This Article

Abstract

Source: Sweeney, A. M., et al. In Vivo Imaging of Cerebrospinal Fluid Transport through the Intact Mouse Skull using Fluorescence Macroscopy. J. Vis. Exp. (2019)

This video demonstrates the process of visualizing cerebrospinal fluid (CSF) flow in a mouse brain using fluorescence imaging. A fluorescent tracer is injected into the cisterna magna (CM), allowing its movement with CSF to be tracked through the subarachnoid and perivascular spaces. Time-lapse imaging captures the tracer's journey, highlighting its distribution into the brain tissue via arterioles.

Protocol

All procedures involving animal models have been reviewed by the local institutional animal care committee and the JoVE veterinary review board.

1. Preparing the cisterna magna cannula, head plate, and head holder

  1. Sterilize all surgical instruments and head plates before surgery.
    NOTE: Fluorescent tracers are delivered directly into CSF via a cisterna magna cannulation.
  2. Briefly, using a needle driver, break the tip of a 30G x 12.7 mm (½ inch) needle, ¾ of the way down, and place the blunt end of the needle into one end of polyethylene 10 (PE10) tubing (about 45 cm long). Make sure that only the bevel is protruding o....

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Results

Microscope diagram with transcranial imaging setup for CSF tracer infusion in brain; influx area graph.

Figure 1. Transcranial macroscopic imaging. (A) Schematic of the macrosco.......

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
0.25% Bupivacaine HCl University of Rochester Vivarium
100 µL Gastight Syringe Model 1710 TLL, PTFE Luer LockHamilton Company81020
A-M Systems Dental Cement PowderFisher ScientificNC9991371
Carprofen University of Rochester Vivarium
ChlorhexidinePrevanticsB10800
CMOS CameraHammamatsuORCA Flash 4.0
Head PlateUniversity of RochesterNo catalog #Custom made at the machine shop at the University of Rochester
High-Temperature CauteryBovie Medical CorporationAA01
Insta-set AcceleratorBob Smith IndustriesBSI-151
Isoflurane - FlurisoVet One502017University of Rochester Vivarium
Ketamine Strong Memorial Hospital Pharmacy
Krazy GlueElmer's Products, IncNo catalog #, see link in commentshttps://www.amazon.com/Krazy-Glue-KG48348MR-Advance-Multicolor/dp/B000BKO6DG
Micropore Surgical tapeFisher Scientific19-027-761
ParaformaldehydeSigma-aldrichP6148
PE10 - Polyethylene .011" x .024" per ft., 100 ft. continuousBraintree ScientificPE10 100 FT
Pump 11 Elite Infusion Only Dual SyringeHarvard Apparatus70-4501
PURALUBE VET OINTMENTDechra
Puritan PurSwab Cotton Tipped Cleaning SticksFisher Scientific22-029-553
Research Macro Zoom MicroscopeOlympusMVX10
Simple Head Holder Plate (for mice)Narishige International USA IncMAG-1
Single-use Needles, BD MedicalVWRBD305106
Sterile Alcohol Prep PadsFisher Scientific22-363-750
Tunable LEDPRIOR Lumen 1600-LED
Xylazine University of Rochester Vivarium

Tags

Mouse Brain ImagingCisterna Magna InjectionSubarachnoid SpacePerivascular SpacesArterioles PenetrationTime lapse ImagingHead StabilizationExcitation Wavelength