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The sequence of methods presented here should allow systematic measurement of the way stress in species comprising above-ground food webs can prime soil microbial communities in ways that lead to alteration of subsequent decomposition of plant litter. The methods are ideal for studying ecosystems comprised of arthropod consumers and herbaceous plants because intact food webs can be spatially circumscribed and contained within mesocosms.
Spatial variability may exist due to gradients in background soil moisture, soil temperature, plant nutrient content, etc. The study design allows one to array mescosms and PVC collars to block along spatial environmental gradients and thereby account for such environmental variation when analyzing for effects.
Although intended for field use, the cavity ring-down spectroscopy instrument (Picarro Inc., Santa Clara, CA, USA; Model: G1101-i) readings are sensitive to movement. Therefore, one should erect a base measurement station central to all of the plots containing PVC collars, and connect the instrument to the collars with lengths of PVC tubing.
Soil litter decomposition has traditionally been measured by enclosing known quantities of litter into fiberglass mesh bags, depositing the bags onto the soil surface in the field and periodically re-measuring the bags to quantify litter disappearance rate (decomposition). The limitation of this method is that one is unable to trace the fate of the decomposed matter or determine the contribution to CO2 mineralization of the soil amendment (added litter) from background soil CO2 mineralization. The tracer method using labeled CO2 presented here helps alleviate this logistical constraint.
Ecosystem ecology and biogeochemistry have operated under the working paradigm that because uneaten plant-litter comprises the majority of detritus, belowground ecosystem processes are only marginally influenced by biomass inputs from higher trophic levels in aboveground food webs, such as herbivores themselves6. However, there is growing evidence that species in higher trophic levels of ecosystems can have a profound influence on belowground processes1,4,5. The method presented here stands to enhance quantification of the contribution of higher trophic levels, either directly through biomass from carcass deposition (e.g. 12, 13) or excretion and egestion (e.g. 14, 15) or indirectly through alteration of plant community composition (e.g. 9) on ecosystem nutrient cycling. Such quantification can help reveal the mechanisms by which animals control ecosystem dynamics as part of a concerted effort to enhance and revise the current working paradigm of biotic control over ecosystem functioning.