$$\rightleftharpoonup{xx}$$
$$\longleftharp{xx}$$,
$$\longrightharp{xx}$$,
Although this procedure has largely focused on the isolation and subsequent treatment of eye-antennal discs, it is amenable to being used to isolate and analyze the wing, haltere, leg and genital discs (Figure 4). The only required modification of the protocol for isolating these discs (as opposed to the eye-antennal disc) is the method of coarse dissection (section 2 of the protocol). The first thoracic leg (T1) pair is found at the anterior of the larva and can be recovered by following the protocol for eye-antennal disc isolation. However the second thoracic leg (T2) discs are attached to the cuticle. To isolate these discs a pair of forceps should be used to hold the mouth hooks (as described above) while another pair of forceps should be used to clasp the ventral cuticle of the animal (make sure to clasp the larva about 1/3 from the mouth hooks. The larva can simply be fillet by tearing the ventral cuticle away from the rest of the larva. The T2 legs will remain attached to the cuticle. The third thoracic (T3) leg is attached to the wing and haltere discs as part of a complex, which itself is also attached to the cuticle. You can choose to separate the disc complex and the T2 legs from the cuticle at this stage or keep the cuticle-disc complex together during the subsequent fixation/antibody incubation steps and isolate the discs during the fine dissection portion of the procedure (section 4). For recovering genital discs, it is best to grasp the larvae at midsection with one pair of forceps and then peel the ventral cuticle away with the other pair of forceps starting at the midsection and ending at the posterior end of the larva. It is recommended that forceps be used to clear away all extraneous tissue and then transfer just the genital disc to the fixative solution using a P-200 pipetman and a yellow tip whose end has been cut with a razor blade.
This procedure is best suited for tissues of limited thickness such as imaginal discs and works best if the antibodies being used are of high titer and specificity. However, it can be adapted to work well with thicker tissues such as the adult ovary, testis, and brain as well as with low titer antibodies or those that give higher than desired “background” staining. When working with thicker tissues, it is suggested that optimal results can be obtained by simply increasing the concentration of paraformaldehyde and/or incubating in the PLP fixative for longer periods of time. Since proper fixation of dissected tissues is essential for success with this protocol it is also suggested that the efficiency of increasing the paraformaldehyde concentration and/or increasing the fixation length be assessed with phalloidin (Figure 1). In particular, close attention should be paid to the “sharpness” of cell outlines and other physical landmarks within the tissue (i.e., the morphogenetic furrow). Another way to ensure that your tissue (particularly thicker samples) is fixed properly is to prepare the 8% paraformaldehyde and PLP solutions fresh prior to each dissection. And finally, the overall quality of the dissection can be increased if tissue is dissected for short periods of time and tissue is transferred into fixative as soon as possible. It is suggested that dissecting for no longer than 15–20 min. Dissecting for shorter durations increases the quality of tissue preservation.
This protocol works well with a wide range of antibodies, but it is true that some antibodies do not work well with the PLP fixative. One notorious example is the antibody that recognizes the Rough (Ro) transcription factor. Rough is expressed within and is required for the specification of a subset of developing photoreceptors 35. The anti-Ro antibody works best, not with PLP, but rather with a PIPES – EGTA - MgSO4 (PEM) buffer 36. Similarly, other antibodies may work best on tissues that have been incubated in still other fixatives. It is suggested that, unless stated otherwise, the PLP fixative should be tried first. If unsuccessful then the process of finding an alternate fixative should begin.
One common issue to confront is the working concentration of the antibody in question. Often times you may be the first researcher to use a particular antibody to detect proteins in your tissue of interest. The working concentration can deviate from what is reported for other tissues. It is suggested that the recommended concentration be tried first. Increase the concentration of the antibody if a signal cannot be seen. On the other hand, if the recommended concentration gives high background staining then diluting the antibody should be tried. Working concentrations among antibodies can vary. For example, the anti-Eyes Absent (Eya) antibody is diluted 1:5 while the anti-Elav antibody works well even at a 1:500 dilution. Some antibodies can even be diluted as far down as 1:3,000. Additionally, this procedure, as written, works best with high specificity antibodies. However, as many have experienced, some antibodies can bind non-specifically to the tissue and this can create a sub-optimal image. This situation can be often corrected by incubating the diluted antibody with fixed embryos or larval carcasses prior to being added to the fixed imaginal discs. Depending upon the level of non-specific background staining, the required length of “pre-absorption” can vary and will have to be worked out on a trial basis. It is also possible to increase the signal/noise ratio by re-using antibodies several times or by conducting several rounds of pre-absorption.
When deciding on which discs should be used in publications and/or presentations, it is best to choose discs that have been oriented with the apical side oriented upwards. It is also best to use discs that are not folded. This is particularly true of the eye-antennal disc. The ventral side of disc tends to fold and unfortunately, there is little one can do to prevent this from happening. One solution is to dissect younger discs as these tend to fold far less. Another option is to just dissect large numbers of discs until you get one that is completely flat. The overall shape of the eye-antennal disc can be affected by the rate at which the larva is torn apart. If one pulls the larva apart too quickly the hole through which the brain-disc complex passes is small and the eye-antennal disc comes out folded and/or stretched. It is best to pull slowly until the larva begins to tear since the hole will be larger. Then you can continue to pull the brain-eye-antennal disc complex slowly. Bear in mind that you can never pull too slowly. Also note, that the rate at which you tear the tissue is not a factor in the isolation of other tissues.
The life cycle of Drosophila consists of three larval phases. Important developmental events take place during each one of these phases, thus it may be important to isolate tissues not just from third larval instars (which is the main focus of this procedure) but also from both first and second larval instars as well. With one minor exception, this procedure can be used, as written, to isolate second instar discs. During the fine dissection portion of the procedure (section 4) it is recommended that sharp tungsten wire should be used to separate the eye-antennal disc from extraneous tissue like the mouth hooks, brain and salivary glands. The tungsten wire can also be used to separate the T2/T3 leg, wing and haltere discs from each other and the overlying cuticle. It is recommend that one end of the tungsten wire (the end that will be used to separate tissues) be sharpened by heating in a boiling sodium nitrate bath. The other end can be inserted into a pin vise; this will allow you to hold the tungsten wire more easily. Unfortunately, it is considerably more difficult to isolate intact first instar discs, therefore it is recommended that you place the entire eye-antennal disc/brain/mouth hook complex on the slide and cover with a coverslip. The amount of dissected tissue can be minimized by using a sharp tungsten wire to remove the salivary glands and overlying cuticle prior to mounting the disc/brain/mouth hook complex onto the slide. It is relatively easy to identify the first instar eye-antennal disc when it is still attached to the brain and mouth hooks (see Figure 6A,D of Kumar and Moses, 2001) 37. The other imaginal discs will have to be separated from the cuticle and placed on a slide for viewing.