RNA Interference-based Investigation of the Function of Heat Shock Protein 27 during Corneal Epithelial Wound Healing

Summary

Herein, we present a protocol to use heat shock protein 27 (HSP27)-specific small interfering RNA to assess the function of HSP27 during corneal epithelial wound healing. RNA interference is the best method for effectively knocking-down gene expression to investigate protein function in various cell types.

Abstract

Small interfering RNA (siRNA) is among the most widely used RNA interference methods for the short-term silencing of protein-coding genes. siRNA is a synthetic RNA duplex created to specifically target a mRNA transcript to induce its degradation and it has been used to identify novel pathways in various cellular processes. Few reports exist regarding the role of phosphorylated heat shock protein 27 (HSP27) in corneal epithelial wound healing. Herein, cultured human corneal epithelial cells were divided into a scrambled control-siRNA transfected group and a HSP27-specific siRNA-transfected group. Scratch-induced directional wounding assays, and western blotting, and flow cytometry were then performed. We conclude that HSP27 has roles in corneal epithelial wound healing that may involve epithelial cell apoptosis and migration. Here, step-by-step descriptions of sample preparation and the study protocol are provided.

Introduction

Corneal epithelial cells (CECs) are continuously shed into tear film, while they are simultaneously replaced by cells from the limbus and corneal epithelial basal layers.¹ Various extrinsic stressors can induce the apoptosis and desquamation of CECs.² The heat shock proteins (HSPs) are highly conserved and can be divided into two families according to molecular size.³ The largest HSP family includes HSP90, HSP70, and HSP60, and the smaller family includes HSP27.⁴ The phosphorylation of HSP27 is known to play an important role in cell survival and is required for cell migration because of the role of this protein in actin remodeling.^5-7 Therefore, we attempted to test the potential role of HSP27 phosphorylation in CEC migration and apoptosis in an in vitro model of epithelial wound healing.

RNA interference (RNAi) using either small or short interfering RNAs (siRNA) has generated interest in both basic and applied biology, as it potentially allows the expression of any gene of interest to be knocked-down.⁸ Herein, we used HSP27-specific siRNA to assess the contribution of HSP27 to CEC wound healing and apoptosis. Traditional RNAi methods for gene knock-down in cells use synthetic RNA duplexes, including two unmodified 21-mer oligonucleotides that can be assembled to create siRNAs. The RNAi siRNA that we used in this present study is a simple and highly efficient method to transfect cells, and this reagent works with various immortalized cell lines. In this present study, we demonstrate the methods used for this analysis, including a scratch-induced directional wound assay, western blotting, siRNA transfection assay, immunofluorescence assay, and flow cytometry.

Protocol

1. Cell Line

1. Culture 10⁶ telomerase-immortalized human corneal epithelial cells (HCECs) in a 6-well plate (density: 1039.9 cell/mm²) in a 37 °C incubator with a 5% CO₂ atmosphere using bronchial epithelium growth medium (BEGM) until they reach 95% confluence.

2. Western Blot Analysis after Creating Epithelial Scratch Wounds

1. Streak a sterile 200 µl pipette tip across the surface of a well of confluent cultured HCECs four times per dish in a biological safety cabinet (Class II, Type A2) and incubate HCECs separately in a 37 °C incubator with a 5% CO₂ atmosphere for 1, 5, 10, 30, 60, and 120 min.
2. Use one 6-well plate for six different samples according to the incubation time after corneal epithelial wounding.
3. Wash wounded HCEC monolayers three times with 1x PBS and then add 2.0 ml BEGM to each well.
4. Detach HCECs using 2 ml 0.25% trypsin-ethylenediaminetetraacetic acid (EDTA) per well for 5 min, centrifuge at 900 x g for 5 min in a 15 ml tube, and aspirate trypsin-EDTA using a 1 ml pipette.
5. Suspend HCECs with 1 ml 1x PBS and transfer them to a 1.5 ml tube.
6. Centrifuge HCECs at 10,000 x g for 15 sec and aspirate 1x PBS using a 1 ml pipette.
7. Resuspend HCECs in 100 µl ice-cold lysis buffer (10 mM Tris, 10 mM NaCl, 2 mM EDTA, 25 mM NaF, 2 mM Na₃VO₄, 1 mM phenylmethanesulfonyl fluoride [PMSF], protease inhibitors [1 µM pepstatin A, 1 µM leupeptin, and 0.1 µM aprotinin] and 0.5% Triton X-100 [pH 7]) and mix them well.
8. Incubate cells for 30 min on ice to induce cell lysis.
9. Centrifuge lysates at 4 °C at 10,000 x g for 15 min, and then transfer supernatants to fresh 1.5 ml tubes (90 µl aliquots) and store them at -80 °C.
10. Determine total protein concentrations of cell lysates using the Bradford protein assay.⁹
11. Load 30 µg total cell proteins into a 10% or 12% acrylamide gel for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then electrophoretically transfer separated protein bands to nitrocellulose filters with a 200 mA current for 1 hr at 4 °C to use in western blot assays.
12. Block nitrocellulose filter membranes with 5% skimmed milk in Tris-buffered saline with Tween 20 (TBST) for 1 hr, add primary rabbit polyclonal antibodies against non-phosphorylated HSP27 (1:1,000 dilution) or primary rabbit polyclonal antibody against phosphorylated HSP27 (1:1,000 dilution) in 5% bovine serum albumin (BSA), and incubate the membranes overnight at 4 °C on a shaker.
13. Detect immunoreactive bands using horseradish peroxidase-conjugated goat anti-rabbit antibodies (1:10,000 dilution) in 5% BSA after washing for 10 min 3 times with TBST.
14. Incubate the membrane in the western blotting luminol reagents (6-7 ml per 10 cm × 5 cm membrane) for 1 min at room temperature.
15. Remove the membrane from reagent solution, remove excess liquid with an absorbent towel, and place in a plastic sheet protector.
16. Working in a dark room with a safe light, place covered membrane in a film cassette with protein side facing up.
17. Place X-ray film on top of membrane and expose for 1 min.

3. siRNA Transfection Assay¹⁰

1. Culture HCECs at 5×10⁵ cells/well in a 6-well plate in a 37 °C incubator with a 5% CO₂ atmosphere using BEGM until they reach 95% confluence.
2. Dilute the transfection reagent (2.5 or 7.5 µl) with 100 µl reduced serum medium for transfection (the dilution factor was 41 or 14.3) and dissolve the HSP27-specific and scrambled control siRNA in 100 µl reduced serum medium to create 10 or 50 nM of HSP27-specific and scrambled control siRNA.
3. Mix 100 µl siRNA solution with 100 µl diluted transfection reagent (1:1 ratio) and incubate the mixture for 15 min at room temperature.
4. Add the siRNA-lipid complexes to cells. Then after 4 hr change media to complete BEGM and incubate the cells for 2 days at 37 °C.
5. Analyze transfected cells by western blotting, as described from sections 4.1 to 4.7.

4. Western Blot Assay for siRNA-transfected Cells¹¹

1. Extract HSP27-specific and scrambled control siRNA-transfected HCECs in a biological safety cabinet using 100 µl ice-cold lysis buffer (10 mM Tris, 10 mM NaCl, 2 mM ethylenediaminetetraacetic acid (EDTA), 25 mM NaF, 2 mM Na₃VO₄, 1 mM phenylmethanesulfonyl fluoride (PMSF), protease inhibitors, and 0.5% Triton X-100, pH 7).
2. Incubate cells for 30 min on ice to induce cell lysis.
3. Pellet lysates at 10,000 x g for 15 min and then transfer supernatants to fresh 1.5 ml tubes (90 µl aliquots) and store them at -80 °C.
4. Determine protein concentrations of the cell lysates using the Bradford protein assay.⁹
5. Load samples with equal amounts of total cell proteins on a 10% or 12% acrylamide gel, subject the gel to SDS-PAGE, and electrophoretically transfer the separated protein bands to nitrocellulose filters with a 200 mA current for 1 hr at 4 °C to use in western blot assays.
6. Block nitrocellulose filter membranes with 5% skimmed milk in Tris-buffered saline with Tween 20 (TBST) for 1 hr, add primary antibodies against phosphorylated and non-phosphorylated HSP27 (1:1,000 dilution), phosphorylated Akt (1:1,000 dilution), non-phosphorylated Akt (1:1,000 dilution, used as a cell survival marker), Bcl-2-associated X protein (1:1,000 dilution, used as a pro-apoptotic protein), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:200 dilution, used as a loading control) in 5% bovine serum albumin (BSA), and incubate the membranes overnight at 4 °C on a shaker.
7. Detect immunoreactive bands using horseradish peroxidase-conjugated goat anti-rabbit antibodies (1:10,000 dilution) in 5% BSA after washing 3 times with TBST, 10 min each wash.
8. Incubate the membrane in the western blotting luminol reagents (6-7 ml per 10 cm × 5 cm membrane) for 1 min at room temperature.
9. Remove the membrane from reagent solution, remove excess liquid with an absorbent towel, and place in a plastic sheet protector.
10. Working in a dark room with a safe light, place the covered membrane in a film cassette with the protein side facing up.
11. Place X-ray film on top of the membrane and expose for 1 min.

5. Scratch-induced Directional Wounding Assay Evaluation of Cell Migration¹²

1. In a biological safety cabinet, make a wound by dragging a sterile pipette tip across the surface of a well of confluent cultures of HSP27-specific siRNA-transfected or scrambled control siRNA-transfected HCECs.
2. Immediately after wounding, wash the cells twice with 1x phosphate buffered saline (PBS) and maintain them in BEGM cultures in a 37 °C incubator with a 5% CO₂ atmosphere for 24 hr after wounding.
3. Photograph HCEC images using an upright microscope at 100X magnification 24 hr after wounding and perform background flattening using the Filter command in image analysis software.
4. Using the Select Measurements command, define the Area of Interest (AOI) with the same sized polygonal shape which can cover perpendicularly from end to end of initial wound, and determine three different AOI in the wounded area of each sample.
5. Automatically count the cell number in each field using the Count/Size Measure menu options.

6. Flow Cytometry Analysis of Apoptosis

1. Culture HSP27-specific siRNA-transfected and control siRNA-transfected HCECs containing each 10 nM siRNA at a concentration of 5×10⁵ cells/well in 6-well plates until the cells reach 95% confluence in a 37 °C incubator with a 5% CO₂ atmosphere in BEGM.
2. Detach HCECs using 2 ml 0.25% trypsin-EDTA per well for 5 min, centrifuge at 900 x g for 5 min in a 15 ml tube, and aspirate trypsin-EDTA using a 1 ml pipette.
3. Wash cells twice with cold PBS and then resuspend the cells in 1x binding buffer (0.1 M HEPES/NaOH [pH 7.4], 1.4 M NaCl, and 25 mM CaCl₂) at a concentration of 10⁶ cells/ml.
4. Transfer 100 µl cell suspension (1 x 10⁵ cells) into a 5 ml culture tube.
5. Add 5 µl fluorescein isothiocyanate-conjugated Annexin V and 5 µl propidium iodide.
6. Gently vortex the cells and incubate them for 15 min at room temperature in the dark.
7. Add 200 µl of 1x binding buffer to each tube and analyze the cells by a flow cytometer within 1 hr.

Results

The expression of phosphorylated HSP27 significantly increased at 5, 10, and 30 min after scratch wounding compared with unwounded HCECs¹³. Western blot analysis revealed that the expression of phosphorylated HSP27 and phosphorylated Akt were both significantly reduced, whereas the expression of Bax was significantly increased in HSP27-specific siRNA-transfected HCECs (Figure 1A-E). The phosphorylated HSP27 expression was reduced by 30% and 40% in 10 nM and 50 ...

Discussion

In this present study, we evaluated the potential role of HSP27 in corneal epithelial wounding using in vitro approaches. The critical steps involved siRNA transfection for HSP27 knock-down to observe the function of HSP27 in cells subjected to stress. Notably, a role for HSP27 was revealed by these experiments in epithelial cell migration and apoptosis during corneal epithelial wound healing. Unlike previous studies¹⁰ that used rat HSP27-specific siRNA to transfect vascular smooth muscle cells, we us...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
Biological safety cabinet	CHC LAB Co.Ltd,  Daejeon, Republic of Korea	CHC-777A2-06	Class II, Type A2
Stealth RNAi™ siRNA	Thermo Fisher Scientific, Inc., Waltham, MA		RNAi siRNA; scrambled control-siRNA and HSP27-specific siRNA
BEGMTM	Lonza, Inc., Walkersville, MD	CC-3171, CC4175	Bronchial epithelium growth medium
Protease inhibitor	Sigma-Aldrich, Inc., St. Louis, MO	P8340 ,P7626	1 μM Pepstatin A, 1 μM Leupeptin, 0.1 μM Aprotinin
Bradford protein assay	Bio-Rad Laboratories, Hercules, CA	#500-0001	Bradford protein assay
Nitrocellulose filters	Amersham, Little Chalfont, UK	RPN3032D	Western blotting membrane
Non-phosphorylated HSP27	Abcam Inc., Cambridge, MA	ab12351	1:1,000 dilution (Total HSP27)
Phosphorylated HSP27 (Ser85)	Abcam Inc., Cambridge, MA	ab5594	1:1,000 dilution HSP27 was phosphorylated at Ser85
Lipofectamine® RNAiMAX reagent	Invitrogen, Carlsbad, CA	13-778-075	Transfection reagent
Phosphorylated Akt (Ser473)	Cell Signaling Technology, Danvers, MA	No. 4060	1:1,000 dilution Akt was phosphorylated at Ser473 (cell survival marker)
Non-phosphorylated Akt	Cell Signaling Technology, Danvers, MA	No. 4061	1:1,000 dilution (Total Akt)
Bcl-2-associated X protein	Cell Signaling Technology, Danvers, MA	No. 4062	1:1,000 (anti-apoptotic protein marker)
GAPDH	Santa Cruz Biotechnology, Santa Cruz, CA	No. 4063	1:1,000 loading control marker (house keeping gene)
Horseradish peroxidase-conjugated goat anti-rabbit antibodies	Thermo Fisher Scientific, Inc., Waltham, MA	NCI1460KR	1:10,000 dilution
OPTI-MEM	Invitrogen, Carlsbad, CA	31985	reduced serum medium for transfection
Image analysis software	Olympus, Inc., Tokyo, Japan	Image-Pro Plus 5.0
Skimed milk powder	Carl Roth GmbH + Co. KG, Karlstruhe, Germany	T145.2
Tris	Amresco LCC, Inc. Solon, OH	No-0497
Sodium Chloride	Amresco LCC, Inc. Solon, OH	No-0241
Six well culture plate	Thermo Fisher Scientific, Inc., Waltham, MA	140675	35.00 mm diameter / well
24-well culuture dish	Thermo Fisher Scientific, Inc., Waltham, MA	142475
Orbital shaker	N-Bioteck, Inc., Seoul, South Korea	NB1015
Bovine serum albumin	Santa Cruz Biotechnology, Santa Cruz, CA	sc-2323
BDFACSCantoTM II	BD Biosciences, Franklin Lakes, NJ		Flow cytometry
X-Ray Film	Kodak, Rochester, NY		Medical X-Ray Cassette with Green 400 Screen
western blotting luminol reagent	Santa Cruz Biotechnology, Santa Cruz, CA	sc-2048
FITC Annexin V Apoptosis Detection Kit I	BD Biosciences, Franklin Lakes, NJ	556547