| MEM-α (minimal essential medium alpha) | ThermoFisher/Gibco | 12561049; 12561056; 12561072 | minimal essential medium for preparation of MSC growth medium (CCM) |
| FBS (fetal bovine serum), premium select | Atlanta Biologicals | S11595; S11510; S11550; S11595-24 | component of complete culture media for all types of cells |
| L-glutamine | ThermoFisher/Gibco | 25030081; 25030149; 25030164 | component of complete culture media for all types of cells |
| Penicillin/Streptomycin | ThermoFisher/Gibco | 15070063 | component of complete culture media for all types of cells |
| Sterilization Filter Units, 0.22 µm PES membrane | MilliporeSigma | SCGPU01RE; SCGPU02RE; SCGPU05RE; SCGPU10RE; SCGPU11RE | media sterilization |
| 150 mm cell culture dish | Nunc | D8554Â SIGMA | cell culture |
| Thermo Forma water-jacketed CO2 humidified incubator | Thermo Fisher | Model 3110 | incubation of cultured cells |
| Early passage MCSs | Center for the preparation and Distribution of Adult Stem Cells at The Texas A&M Health Science Center College of Medicine Institute for Regenerative Medicine at Scott & White | NA | preparation of 2D and 3D cultures of MSCs |
| water bath | VWR | 89501-468 | warming media to 37 °C |
| Pipettes | Eppendorf | 492000904 | manual liquid handling |
| Pipete-Aid | Drummond Scientific Company | 4-000-300 | handling sereological pipetes |
| Costar sterile serological pipet (5, 10, 25 and 50 ml) | Corning | 4487; 4101; 4251; 4490 | liquid handling |
| PBS (phosphate buffered saline), pH 7.4 | ThermoFisher/Gibco | 10010023; 10010072; 10010031; 10010049 | cell culture processing |
| 0.25% trypsin/EDTA solution | ThermoFisher/Gibco | 25200056; 25200072; 25200114 | lifting adherent cells and dispersing cell aggregates |
| 15 ml conical tube | Corning/BD Falcon | 352097 | cell centrifugation |
| 50 ml conical tube | Corning/BD Falcon | 352098 | cell centrifugation |
| Eppendor refrigerated centrifuge | Eppendorf/Fisher Scientific | Model 5810R | cell centrifugation |
| hemocytometer | Fisher Scientific | 26716 | cell counting |
| trypan blue | Sigma-Aldrich | T8154 SIGMA | dead cell exclusion during cell counting in hemacytometer |
| Defined xenofree MSC medium-1 (XFM-1) | ThermoFisher/Gibco | A1067501 | Xeno-free media specifically formulated for the growth and expansion of human mesenchymal stem cells |
| Defined xenofree MSC medium-2 (XFM-2) | Stem Cell Technologies | 5420 | Defined, xeno-free medium for human mesenchymal stem cells |
| HSA (Human serum albumin) | Gemini | 800-120 | Component of xeno-free MSC media |
| rHSA (recombinant Human serum albumin) | Sigma-Aldrich | A9731Â SIGMA | Component of xeno-free MSC media |
| Total RNA isolation Mini Kit | Qiagen | 74104 | Total RNA extraction |
| Qiashredder | Qiagen | 79654 | Sample homogenization prior to total RNA extraction |
| RNAse-free DNase Set | Qiagen | 79254 | On-column DNA elimination during total RNA extraction |
| β-mercaptoethanol | Sigma-Aldrich | M6250 ALDRICH | inhibition of RNAses in RLT buffer |
| Vortex | VWR | 97043-562 | mixing sample |
| Spectrophotometer | Biorad | NA | RNA concentration and quality |
| High capacity cDNA Reverse Transcription Kit | ThermoFisher/Applied Biosystems | 4368814 | transcription of total RNA into cDNA |
| Gene Expression Assays | ThermoFisher/Applied Biosystems | varies | primer/probe combination for real-time PCR |
| Fast Universal PCR Master Mix | ThermoFisher/Applied Biosystems | 4352042; 4364103; 4366073; 4367846 | master mix for real-time PCR reaction |
| Real-time PCR system (ABI Prism 7900 HT Sequence Detection System) | ABI Prizm | NA | real-time PCR |
| 1.5 ml centrifuge tube | Eppendorf | 22364111 | cell centrifugation, sample collection and storage |
| (-80 °C) freezer | Thermo Fisher | Model Thermo Forma 8695 | sample storage |
| PGE2 (Prostaglandin E2) ELISA Kit | R&D Systems | KGE004B | estimation of cytokine concentration in the sample |
| DMEM (Dulbecco’s modified Eagle medium) | ThermoFisher/Gibco | 10566-016; 10566-024;10566-032 | macrophage culture media |
| J774 mouse macrophages | ATCC | TIB-67 | mouse macrophage cell line |
| 12-well plate | Corning | 3513 | in vitro macrophage stimulation |
| LPS (lipopolysaccharide) | Sigma-aldrich | L4130 | in vitro macrophage stimulation |
| Mouse TNF-a ELISA kit | R&D Systems | MTA00B | estimation of cytokine concentration in the sample |
| Mouse IL-10 (interleukin 10) ELISA kit | R&D Systems | M1000B | estimation of cytokine concentration in the sample |
| RPMI-1640 medium | ThermoFisher/Gibco | 11875-085 | splenocyte culture media |
| BALB/c mice | The Jackson Laboratory | 651 | in vivo spheroid delivery; splenocyte preparation |
| Anti-Mouse CD3e Functional Grade Purified | eBioscience | 145-2C11 | in vitro splenocyte stimulation |
| 70 μm strainer | Corning | 352350 | Splenocyte preparation |
| Red blood cell lysis solution (1x) | Affymetrix eBioscience | 00-4333 | removal of red blood cells during splenocyte isolation |
| Mouse IFN-γ (interferon gamma) ELISA kit | R&D Systems | MIF 00 | estimation of cytokine concentration in the sample |
| LNCaP prostate cancer cells | ATCC | CRL-1740 | study the effect of 3D MSCs on cancer cell lines in vitro |
| DNA-based cell proliferation assay kit | ThermoFisher | C7026 | cell number measurement based on DNA content |
| NaCl | Sigma-Aldrich | S5150 | component of lysis reagent |
| EDTA (ethylenediaminetetraacetic acid) | ThermoFisher | FERR1021 | calcium chelator, component of lysis reagent |
| Rnase A | Qiagen | 19101 | RNA degradation for measurement of DNA |
| Filter-based multi-mode microplate reader | BMG Technology | NA | Microplate assays (ELISA, cell quantification, etc.) |
| HBSS (Hanks balanced salt solution), no calcium, no magnesium, no phenol red | ThermoFisher/Gibco | 14175079 | resupsension of MSC spheroids prior to in vivo injections |
| Isoflurane | MWI Vet Supply | 502017 | Anesthesia for in vivo injections |
| Oxygen, compressed gas | Praxair | NA | For use with isoflurane |
| Thermo Forma BSL-2 cabinet | Thermo Fisher | Model 1385 | Sterile cell culture |
| Safety I.V. catheter/needle stiletto, 20 G , 1 inch | Terumo | SR*FNP2025 | Delivery of shperoids into peritoneal cavity |
| Sterile micropipette tips | Eppendorf | varies | liquid/cells handling |