Atomic force microscopy (AFM), a versatile tool, has found many applications in cell biology research1,2,3,4,5. Apart from its high-resolution imaging capability, the native force-probing feature allows biophysical properties of living cells to be investigated directly in situ at the single-cell level6,7. These include the rigidities of subcellular structures or even whole cells8,9,10,11,12, specific ligand/receptor binding strengths at the single-molecule level on the cell surface13, and adhesion forces between single-pairs of solid particles and cells or between two cells1,2,14,15. The latter two are often categorized as single-cell force spectroscopy (SCFS)16. Owing to the readily available cantilevers with various spring constant, the force range accessible to AFM is rather broad from a few piconewtons (pN) to micronewtons (µN), which adequately covers the entire range of cellular events involving forces from a few tens of pN, such as receptor-based single-molecule binding, to nN, such as phagocytic cellular events15. This large dynamic force range makes AFM advantageous over other force-probing techniques such as optical/magnetic tweezers and a biomembrane force probe, as they are more suitable for weak-force measurements, with force typically less than 200 pN17,18. In addition, AFM can function as a high-precision manipulator to deliver various stimuli onto single cells in a spatiotemporally defined manner4,19. This is desirable for the real-time single-cell activation studies. Combined with live-cell fluorescence imaging, the subsequent cellular response to the specific stimulus can be monitored concurrently, thus making AFM-based SCFS exceedingly robust as optical imaging providing a practical tool to probe cellular signaling. For instance, AFM was used to determine the strains required to elicit calcium transients in osteoblasts20. In this work, calcium transients were tracked fluorescently through calcium ratiometric imaging after the application of localized forces on cultured osteoblasts with an AFM tip. Recently, AFM was employed to stretching collagen fibrils on which hepatic stellate cells (HSC) were grown and this mechano-transduced HSC activation was real-time monitored by a fluorescent Src biosensor, whose phosphorylation as represented by the fluorescence intensity of the biosensor is correlated with HSC activation3.
In AFM-based SCFS experiments, proper functionalization of AFM cantilevers is a key step toward successful measurements. Since our research interest focuses on immune cells activation, we routinely functionalize cantilevers with particulate matters such as single solid particles that can trigger phagocytosis and/or strong immune responses4,14,15 and single T cells that can form an immune synapse with antigen presenting cells, such as activated dendritic cells (DC)2. Single solid particles are normally coupled to a cantilever via an epoxy glue in the air environment, whereas single T cells, due to their non-adhesive nature, are functionalized to a cantilever via a biocompatible glue in solution. Here, we describe the methods to perform these two types of cantilever modification and give two associated applications as well. The first application is to probe T cell/DC interactions with AFM-SCFS to understand the suppressive mechanism of regulatory T cells from the cell mechanics point of view. The second one involves combining AFM with live-cell fluorescence imaging to monitor the cellular response of macrophage to a solid particle in real-time to reveal the molecular mechanism of receptor-independent phosphatidylinositol 4,5-bisphosphate (PIP2)-Moesin mediated phagocytosis. The aim of this protocol is to provide a reference framework for interested researchers to design and implement their own experimental settings with AFM-based single-cell analysis for immunological research.