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During development, cell-cell communication and interactions are critical for the establishment of tissue and organ structure and function. In some cases, these cell-cell interactions seal off organs from the surrounding environment to ensure proper organ function. This is the case for the nervous system, which is insulated by the blood-brain barrier (BBB). Dysfunction of the BBB in humans has been linked to neurological disorders including epilepsy, and breakdown of the barrier has been observed in neurodegenerative diseases including multiple sclerosis and amyotrophic lateral sclerosis1. In mammals, the BBB is formed by tight junctions between endothelial cells2,3. Other animals, including the fruit fly, Drosophila melanogaster, have a BBB composed of glial cells. These glial cells form a selectively permeable barrier to control movement of nutrients, waste products, toxins, and large molecules into and out of the nervous system4. This allows for the maintenance of the electrochemical gradient necessary to fire action potentials, allowing for mobility and coordination4. In D. melanogaster, the glia protect the nervous system from the potassium-rich, blood-like hemolymph5.
In the central nervous system (CNS) and peripheral nervous system (PNS) of D. melanogaster, two outer glial layers, the subperineurial glia and the perineurial glia, as well as an outer network of extracellular matrix, the neural lamella, form the hemolymph-brain and hemolymph-nerve barrier6, referred to as the BBB throughout this article. During development subperineurial glia become polyploid and enlarge to surround the nervous system5,6,7,8,9,10,11. The subperineurial glia form septate junctions, which provide the main diffusion barrier between the hemolymph and the nervous system5,6,12. These junctions are molecularly similar to the septate-like junctions found at the paranodes of myelinating glia in vertebrates, and they perform the same function as tight junctions in the BBB of mammals13,14,15,16,17. The perineurial glia divide, grow, and wrap around the subperineurial glia to regulate the diffusion of metabolites and large molecules6,10,18,19. BBB formation is complete by 18.5 h after egg laying (AEL) at 25 °C5,8. Previous studies have identified genes that are critical regulators of BBB formation20,21,22. To better understand the exact roles of these genes, it is important to examine the effect of mutation of these potential regulators on BBB integrity. While previous studies have outlined approaches for assaying BBB integrity in embryos and larvae, a comprehensive protocol for this assay has yet to be described5,7. This step-by-step protocol describes methods for assaying BBB integrity during D. melanogaster embryonic and third instar larval stages.