Preparation of SNS Cobalt(II) Pincer Model Complexes of Liver Alcohol Dehydrogenase

Summary

The preparation of SNS pincer cobalt(II) model complexes of liver alcohol dehydrogenase is presented here. The complexes can be prepared by reacting the ligand precursor with CoCl₂·6H₂O and can then be recrystallized by allowing diethyl ether to slowly diffuse into an acetonitrile solution that contains the cobalt complex.

Abstract

Chemical model complexes are prepared to represent the active site of an enzyme. In this protocol, a family of tridentate pincer ligand precursors (each possessing two sulfur and one nitrogen donor atom functionalities (SNS) and based on bis-imidazole or bis-triazole compounds) are metallated with CoCl₂·6H₂O to afford tridentate SNS pincer cobalt(II) complexes. Preparation of the cobalt(II) model complexes for liver alcohol dehydrogenase is facile. Based on a quick color change upon adding the CoCl₂·6H₂O to acetonitrile solution that contains the ligand precursor, the complex forms rapidly. Formation of the metal complex is complete after allowing the solution to reflux overnight. These cobalt(II) complexes serve as models for the zinc active site in liver alcohol dehydrogenase (LADH). The complexes are characterized using single crystal X-ray diffraction, electrospray mass spectrometry, ultra-violet visible spectroscopy, and elemental analysis. To accurately determine the structure of the complex, its single crystal structure must be determined. Single crystals of the complexes that are suitable for X-ray diffraction are then grown via slow vapor diffusion of diethyl ether into an acetonitrile solution that contains the cobalt(II) complex. For high quality crystals, recrystallization typically takes place over a 1 week period, or longer. The method can be applied to the preparation of other model coordination complexes and can be used in undergraduate teaching laboratories. Finally, it is believed that others may find this recrystallization method to obtain single crystals beneficial to their research.

Introduction

The purpose of the presented method is to prepare small-molecule analogs of LADH to further understand the catalytic activity of metalloenzymes. LADH is a dimeric enzyme that contains a cofactor-binding domain and zinc(II) metal-containing catalytic domain¹. LADH, in the presence of co-factor NADH, can reduce ketones and aldehydes to their respective alcohol derivatives². In the presence of NAD⁺, LADH can perform reverse catalysis of oxidation of alcohols to ketones and aldehydes². The crystal structure of LADH’s active site shows that its zinc(II) metal center is bound to one nitrogen atom, provided by a histidine side chain and two sulfur atoms and offered by two cysteine ligands³. Further research has shown that the zinc metal center is ligated with a labile water molecule, resulting in pseudo-tetrahedral geometry around the metal center⁴.

We have previously reported and utilized SNS pincer ligand precursors as well as metallated the ligand precursors with ZnCl₂ to form Zn(II) complexes that contain the tridentate ligand precursor^5,6,7. These ligand precursors are shown in Figure 1. These zinc(II) complexes exhibited activity for the stoichiometric reduction of electron-poor aldehydes and are thus model complexes for LADH. Subsequently, the synthesis and characterization of a series of copper(I) and copper(II) complexes that contain SNS ligand precursors have been reported^8,9,10.

Although LADH is a zinc(II) enzyme, we are interested in preparing cobalt(II) model complexes of LADH in order to obtain more spectroscopic information about the cobalt(II) analogs of LADH. The cobalt(II) complexes are colored, whereas the zinc(II) complexes are off-white. Since the cobalt(II) complexes are colored, ultraviolet visible spectra of the complexes can be obtained, in which information about the strength of the ligand field in cobalt(II) complexes can also be gathered. By using information from Gaussian calculations and the experimentally obtained ultra-violet visible spectra, information about the strength of the ligand field can be deduced. Cobalt(II) is a good substitute for zinc(II), since both ions have similar ionic radii and similar Lewis acidities^11,12.

The presented method involves synthesizing and characterizing model complexes to attempt to mimic the natural catalytic behavior of LADH^5,6. We have previously metallated a family of ligand precursors with ZnCl₂ to form zinc(II) model complexes of LADH, which modeled the structure and reactivity of the zinc active site in LADH⁴. Through multiple experiments, these pincer ligands have proven to be robust under different environmental conditions and have remained stable with a diverse collection of attached R-groups.^5,6

Tridentate ligands are preferable compared to monodentate ligands, because they have been found to be more successful with metalation due to the strong chelate effects of tridentate ligands. This observation is due to a more favored entropy of tridentate pincer ligand formation in comparison to a monodentate ligand¹³. Furthermore, tridentate pincer ligands are likely to prevent dimerization of the metal complexes, which is favored because dimerization is likely to slow catalytic activity of a complex¹⁴. Thus, using tridentate pincer ligands has been proven successful in organometallic chemistry in the preparation of catalytic active and robust complexes. SNS pincer complexes have been less studied than other pincer systems, as pincer complexes usually contain second and third row transition metals¹⁵.

This research on metalloenzymes can help further the understanding of their enzymatic activity, which can be applied to other areas in biology. This method of synthesizing model complexes compared to the alternative method (synthesizing the entire protein of LADH) is favorable for a number of reasons. The first advantage is that model complexes are low in molecular mass and are still capable of accurately representing catalytic activity and environmental conditions of the natural enzyme’s active site. Second, model complexes are simpler to work with and produce reliable and relatable data.

This manuscript describes the synthetic preparation and characterization of two cobalt(II) pincer model complexes of LADH. Both complexes feature a pincer ligand that contains sulfur, nitrogen, and sulfur donor atoms. The first complex (4) is based on an imidazole precursor, and the second (5) is based on a triazole precursor. The complexes show reactivity for the stoichiometry reduction of electron poor aldehydes in the presence of a hydrogen donor. These reactivity results will be reported in a subsequent manuscript.

Protocol

1. Synthesis of chloro-(n³-S,S,N)-[2,6-bis(N-isopropyl-N’-methyleneimidazole-2-thione)pyridine]cobalt(II)tetrachlorocobaltate [4]

1. To prepare complex 4, add 0.121 g (3.12 x 10^-4 mol) of 2,6-bis(N-isopropyl-N’-methyleneimidazole-2-thione)pyridine (C₁₉H₂₅N₅S₂)⁶ to 15 mL of acetonitrile in a 100 mL round bottom flask. Next, to this solution, add 0.0851 g (3.58 x 10^-4 mol) of cobalt chloride(II) hexahydrate (CoCl₂·6H₂O). The reaction solution should change color from light yellow to emerald green immediately after the cobalt(II) chloride hexahydrate is added.
2. Add a stir bar to the flask. Reflux and stir the reaction for 20 h to ensure complete reaction. Remove the solvent using a rotovap under reduced pressure.

2. Recrystallization of chloro-(n³-S,S,N)-[2,6-bis(N-isopropyl-N’-methyleneimidazole-2-thione)pyridine]cobalt(II)tetrachlorocobaltate [4] by slow vapor diffusion

1. Dissolve the solute in acetonitrile (7.5 mL), filter the solution, and place the solution evenly in 1 dram vials. Fill each vial with 1.5 mL of acetonitrile solution.
   1. Add cotton to cap the vials, which allows for slow vapor diffusion. Fit the cotton snugly in the opening at the top of the vial.
   2. Place the vials in a 240 mL jar containing 50 mL of diethyl ether. Close the jar with a cap.
   3. Allow the crystals to grow over a period of 1 week.
      NOTE: Recrystallization may take longer than 1 day.

3. Synthesis of chloro-(n³-S,S,N)-[2,6-bis(N-isopropyl-N’-methylenetriazole-2-thione)pyridine]cobalt(II)tetrachlorocobaltate [5]

1. To prepare complex 5, add 0.183 g (4.70 x 10^-4 mol) of 2,6-bis(N-isopropyl-N’-methylenetriazole-2-thione)pyridine (C₁₇H₂₃N₇S₂)⁶ to 15 mL of acetonitrile in a 100 mL round bottom flask. To this solution, add 0.223 g (9.37 x 10^-4 mol) of cobalt chloride hexahydrate (CoCl₂·6H₂O). The reaction solution should change color from light yellow to royal blue immediately after the cobalt(II) chloride hexahydrate is added.
   1. Add a stir bar to the flask. Reflux and stir the reaction for 20 h to ensure complete reaction. Remove the solvent using a rotovap under reduced pressure.

4. Recrystallization of chloro-(n³-S,S,N)-[2,6-bis(N-isopropyl-N’-methylenetriazole-2-thione)pyridine]cobalt(II)tetrachlorocobaltate [5] by slow vapor diffusion

1. Dissolve the solute in acetonitrile (9.0 mL), filter the solution, and place the solution evenly in 1 dram vials. Fill each vial with 1.5 mL of acetonitrile solution.
   1. Add cotton to cap the vials, which allows for slow vapor diffusion. Fit the cotton snugly in the opening at the top of the vial.
   2. Place the vials in a jar containing 50 mL of diethyl ether. Close the vial with a cap.
   3. Allow the crystals to grow over a period of 1 week.
      NOTE: Recrystallization may take longer than 1 day.

5. X-ray crystallography

1. Mount a crystal of 4 on a nylon loop. Collect the data on a Rigaku Oxford Diffraction diffractometer. Here, X-ray diffraction data is collected at 173(2) K. Solve the crystal structure using Olex2¹⁶ and ShelXT¹⁷ structure solution programs using direct methods. Refine the structure with the ShelXL¹⁸ refinement package using least squares minimization.
2. Mount a crystal of 5 on a nylon loop. Collect the X-ray diffraction data on a Rigaku Oxford Diffraction diffractometer. Here, X-ray diffraction data is collected at 173(2) K. Solve the crystal structure using Olex2¹⁶ and ShelXT¹⁷ structure solution programs using direct methods. Refine the structure with the ShelXL¹⁸ refinement package using least squares minimization.

Results

Synthesis
The syntheses of complexes 4 and 5 were successfully carried out by reacting an acetonitrile solution containing a bis-thione ligand precursor with cobalt (II) chloride hexahydrate (Figure 2). This reaction occurred at a reflux temperature in the presence of air. In general, complexes 4 and 5 were observed to be soluble in acetonitrile, dimethyl sulfoxide, dichloromethane, and methanol. Complex...

Discussion

The preparation of complexes 4 and 5 is facile. The key step is to add the solid CoCl₂·6H₂O to an acetonitrile solution that contains the respective ligand precursor. The solution turns dark green within seconds after the addition of CoCl₂·6H₂O to form complex 4. The solution turns bright blue after the addition of CoCl₂·6H₂O to form complex 5. To ensure complete reaction, t...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
100 mL Round Bottomed Flask	Chem Glass	CG150691	100mL Single Neck Round Bottomed Flask, 19/22 Outer Joint
Acetonitrile	Fisher	HB9823-4	HPLC Grade
Chiller for roto-vap	Lauda	L000638	Alpha RA 8
Cobalt Chloride hexahydrate	Acros Organics	AC423571000	Acros Organics
Diethyl Ether	Fisher	E-138-1	Diethyl Ether Anhydorus
graduated cylinder	Fisher	S63456	25 mL graduated cylinder
hotplate	Fisher	11-100-49SH	Isotemp Basic Stirring Hotplate
jars	Fisher	05-719-481	250 mL jars
Ligand	-----	-----	Synthezied previously by Professor Miecznikowski
medium cotton balls	Fisher	22-456-80	medium cotton balls
one dram vials	Fisher	03-339	one dram vials with TFE Lined Cap
pipet	Fisher	13-678-20B	5.75 inch pipets
pipet bulbs	Fisher	03-448-21	Fisher Brand Latex Bulb for pipet
recrystallizing dish for sand bath	Fisher	08-741 D	325 mL recrystallizing dish for sand bath
reflux condensor	Chem Glass	CG-1218-A-22	Condenser with 19/22 inner joint
Rotovap	Heidolph Collegiate	36000090	Brinkmann; Heidolph Collegiate Rotary Evaporator with Heidolph WB eco bath Heidolph Rotary Evaporator
sea sand for sandbath	Acros Organics	612355000	washed sea sand for sand bath
Stir bar	Fisher	07-910-23	Egg-Shaped Magnetic Stir Bar
Vacum grease	Fisher	14-635-5D	Dow Corning High Vacuum Grease
vacuum pump for rotovap	Heidolph Collegiate	36302830	Heidolph Rotovac Valve Control