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Shown here are the representative results for both the strong and weak encoding protocols described using male tyrosine hydroxylase (Th)-Cre transgenic rats13 with Long-Evans strain backcrossed four times to Lister Hooded strain and wild-type Lister Hooded rats. Th-Cre transgenic rats were used as this rat line will be used in future studies involving optogenetics. Using each protocol, memory was tested with delays of 1 and 24 h. Tests at 1 h demonstrate short-term memory, while 24-h tests demonstrate long-term memory. The exclusion value for encoding preference was calculated as described in the protocol, using the combined data from five tests (strong and weak encoding protocols) as [50.8% ± (2×10.8%)]. Rats that had an encoding preference above and below these values were excluded from the analyses of the respective tests.
For strong encoding experiments, 16 rats were used, and for weak encoding experiments, 19 rats were used. During the strong encoding trials (3 × 5 min encoding; Figure 4A), there was no significant preference for either object (52.0 ± 1.9%, n = 16, t15 = 1.1, p = 0.29; one-sample t-test versus chance level). This strong encoding protocol led to preference for the object at the novel location, as shown in terms of mean percentage exploration, which was significantly higher than the chance level (50%) in tests with both 1-h and 24-h delays (1-h memory, 77.9 ± 2.4%, n = 8, t7 = 11.8, p < 0.001; 24-h memory, 65.2 ± 5.3%, n = 8, t7 = 2.8, p = 0.025; one-sample t-test versus chance level). There was no significant difference between 1-h and 24-h memory (p = 0.056; unpaired Welch's t-test).
During the weak encoding trials (20 min encoding; results pooled from four contexts; Figure 4B), there was no significant preference for either object (51.1 ± 1.0%, n = 66, t65 = 1.2, p = 0.24; one-sample t-test versus chance level). This weak encoding protocol produced a significant increase in the preference for the object at the novel location compared to chance level in tests with a 1-h delay, but not 24-h delay (combined data from all four contexts; 1-h memory, 66.7 ± 2.0%, n = 32, t31 = 8.2, p < 0.001; 24-h memory, 49.6 ± 2.6%, n = 34, t33 = 0.16, p = 0.87; one-sample t-test versus chance level). There was a significant difference between the performance in tests with 1-h and 24-h delays (1-h memory: n = 32, 24-h memory: n = 34, t61.5 = 5.2, p < 0.001; unpaired Welch's t-test).
Memory at the group level was not observed in the 24-h delay test as indexed by chance-level performance, but showed individual variations. This higher variation for weak to no-memory conditions (e.g., 24-h test) was commonly observed due to more random exploration of the objects. Hence, it is important not to interpret the performance of rats individually. Instead, distribution of individual data points can be used along with the group average as the reliable outcome of the test. The stronger the encoding, the more uniform the behavior of the rats becomes, and the fewer the number of rats needed for reaching statistical significance, as can be observed in Figure 4A for the strong encoding protocol. In contrast, larger groups are needed for obtaining reliable results for weak conditions (Figure 4B).

Figure 4: Memory performance after strong and weak encoding. (A) The strong encoding trial (3 × 5 min encoding) followed by either 1-h or 24-h test trials. There was no significant preference for either object during encoding trials (n = 16). The strong encoding produced significantly increased preference for the object at the novel location in the tests with both 1-h and 24-h delays compared to chance level (1-h and 24-h memory: n = 8 in each group). There was no significant difference between groups. (B) The weak encoding trial (20 min encoding) followed by either 1-h or 24-h test trials. There was no significant preference for either object as a group during encoding trials (n = 66). The weak encoding produced significantly increased preference for the object at the novel location in the test with a 1-h, but not 24-h delay, compared to chance level (1-h memory: n = 32; 24-h memory: n = 34). There was a significant difference between the performance in tests with 1-h and 24-h delays. The results were pooled from four contexts. Individual data points are presented as dots. All bars show the percentage of exploration of the object at novel location as mean ± SEM. *p < 0.05, ***p < 0.001; one-sample t-test versus chance level (50%, dashed line). ###p < 0.001; ns, not significant; unpaired Welch's t-test. Please click here to view a larger version of this figure.
A significant advantage of this established protocol is that it can be performed four times using four distinct contexts (Figure 1C) with the same cohort of rats. The results shown in Figure 5 demonstrate one possible way of using counterbalancing with two experimental groups (1-h and 24-h memory groups). The two groups were counterbalanced over two contexts (contexts 1 and 2), and this was repeated in two additional contexts (contexts 3 and 4; Figure 5A). The results from the four contexts are presented individually in Figure 5B,D, where the memory for each experimental group was assessed by comparing the preference to chance level in each context (1-h memory: Context 1, 69.9 ± 3.6%, n = 9, t8 = 5.5, p < 0.001; Context 2, 65.6 ± 3.9%, n = 9, t8 = 4.0, p = 0.004; Context 3, 65.2 ± 3.8%, n = 7, t6 = 4.0, p = 0.007; Context 4, 65.3 ± 5.6%, n = 7, t6 = 2.7, p = 0.035; 24-h memory: Context 1, 45.1 ± 6.4%, n = 9, t8 = 0.77, p = 0.46; Context 2, 49.1 ± 4.9%, n = 9, t8 = 0.18, p = 0.86; Context 3, 57.2 ± 4.1%, n = 8, t7 = 1.7, p = 0.12; Context 4, 47.6 ± 4.7%, n = 8, t7 = 0.52, p = 0.62; one-sample t-test versus chance level).
In contexts 1, 2, and 4, between-subject comparison of the groups revealed significant differences between 1-h and 24-h memory (1-h memory versus 24-h memory: Context 1, t12.7 = 3.4, p = 0.005; Context 2, t15.2 = 2.6, p = 0.019; Context 3, t13.0 = 1.4, p = 0.17; Context 4, t12.2 = 2.4, p = 0.032; unpaired Welch's t-test). For a better representation and within-subject comparison of the data, the results from two counterbalanced contexts were combined (Figure 5C,E). The combined experimental groups were compared to chance level individually again (Contexts 1 and 2 combined: 1-h memory, 67.8 ± 2.6%, n = 18, t17 = 6.7, p < 0.001; 24-h memory, 47.1 ± 3.9%, n = 18, t17 = 0.74, p = 0.47; Contexts 3 and 4 combined: 1-h memory, 65.3 ± 3.3%, n = 14, t13 = 4.7, p < 0.001; 24-h memory, 52.4 ± 3.2%, n = 16, t15 = 0.73, p = 0.48; one-sample t-test versus chance level). Then, the experimental groups were compared to each other.
In both context pairs, there were significant differences between groups as revealed by within-subject comparisons (1-h memory versus 24-h memory: Contexts 1 and 2 combined, t16 = 3.5, p = 0.003; Contexts 3 and 4 combined, t13 = 2.4, p = 0.032; paired t-test). Comparable results were obtained with wild-type Lister Hooded rats, too, in the weak encoding protocol using contexts 1 and 4 for the two counterbalanced sessions (data not shown). The replicability and reliability of the results were validated by comparing each data set using one-way ANOVA. No significant difference was detected among the four contexts (1-h memory: F3,28 = 0.31, p = 0.81; 24-h memory: F3,30 = 0.99, p = 0.41). Therefore, the object location test can be repeated reliably with minimum influence of repetitions, given that the instructions in this protocol are followed.

Figure 5: Different ways of presenting and analyzing the results of the weak encoding protocol with two experimental groups counterbalanced over two sessions. (A) The experimental design for counterbalancing with two experimental groups (1-h and 24-h memory groups) over two sessions (contexts 1 and 2). The counterbalancing was repeated in two additional sessions (contexts 3 and 4). (B and D) The results from each context and the experimental groups were individually compared to chance level and to each other. In all four contexts, the preference for the object at the novel location in tests with a 1-h delay was significantly increased compared to chance level [Context 1 and 2: n = 9 per group (B); Context 3 and 4: n = 7 per group (D)]. In 24-h delay tests, the preference for the object at the novel location did not differ from chance (Context 1 and 2: n = 9 per group; Context 3 and 4: n = 8 per group). There was a significant difference between the preferences of experimental groups in contexts 1, 2, and 4, but not context 3, as revealed by between-subject comparison. *p < 0.05, **p < 0.01, ***p < 0.001; one-sample t-test versus chance level (50%, dashed line). #p < 0.05; ##p < 0.01; ns, not significant; unpaired Welch's t-test. (C and E) The results are presented after combining the experimental groups from the two counterbalanced contexts [Contexts 1 and 2 combined, n = 17 per group (C); Contexts 3 and 4 combined, n = 14 per group (E)]. The preference for the object at the novel location was significantly increased compared to chance level in tests with a 1-h, but not 24-h delay, in both context pairs. The within-subject comparison of the experimental groups revealed significant differences between the preferences for the object at the novel location in tests with 1-h and 24-h delays in both context pairs. ***p < 0.001; one-sample t-test versus chance level (50%, dashed line). #p < 0.05, ##p < 0.01; paired t-test. Individual data points are presented as dots. All bars show the percentage of exploration of the object at the novel location as mean ± SEM. Please click here to view a larger version of this figure.