Culturing cells in 3D models is advantageous compared to the typical 2D cell culture methods, as it better recapitulates tissue structures and cell-cell interactions found in vivo. Spheroids are 3D cell aggregates that facilitate complex cell-cell interactions; these interactions are compromised in cells grown as a monolayer on tissue culture plastic. Spheroids can be grown within a scaffold that mimics the microenvironment where the cell originated from. For example, hydrogels are a popular biomaterial used to culture cells/spheroids in as they allow precise control of parameters such as stiffness, degradability, pore size, and the incorporation of growth factors1 (Figure 1A). Mechanical cues often precede biochemical changes in disease pathologies such as cancer and fibrosis2,3, therefore, acquiring the biomechanical signature in clinically relevant 3D models of disease is instrumental for developing diagnostic interventions to inform therapeutic practice and understanding the underlying pathophysiology4.
Brillouin Microscopy (BM) is an imaging technique that allows the mechanical properties of biological materials to be measured in 2D planes5,6,7. BM has some key advantages over other more commonly used methods, such as atomic force microscopy (AFM) and elastography. It is well-documented that AFM can achieve high spatiotemporal mechanical resolution and that elastography can probe mechanics inside samples8,9 . BM does not require direct contact with the material under investigation, making it an ideal technique over AFM for samples/cells that are difficult to access, such as spheroids within hydrogels. Another key advantage of BM is that it does not require labelling of samples and can provide microscale resolution inside biological samples, which commonly used elastography methods cannot achieve7; more advanced optical elastography techniques can operate at microscale resolution10. It should be noted that the precise effective resolution in Brillouin imaging of heterogeneous biological samples is not trivial to define. Firstly, for a given illumination wavelength, it depends on the optical properties describing the focal spot size (numerical aperture, NA, of the objective lens and sample opacity). Additionally, the accuracy with which the mechanical properties of the sample can be probed, as well as the shape of the Brillouin spectrum, is influenced by the acoustic characteristics of the material (phonon wavelength and propagation length)11,12. The underlying phenomenon behind Brillouin spectroscopy is Brillouin scattering, where the incident monochromatic laser light interacts with spontaneous, thermally induced acoustic phonons within the biological medium. This results in inelastic scattering of light and (Brillouin frequency shift, BFS) in Figure 1B and is typically in the order of several GHz and depending on whether the photon loses, or gains energy, Brillouin Stokes and anti-Stokes peaks are detected in the spectrum of the scattered light, respectively. Through its dependence on the local sound velocity in the medium, the BFS is related to the elastic longitudinal modulus, which is in turn empirically correlated to the Young's modulus7,13; however, care must be taken when making comparisons between these moduli as (i) they are not directly related to each other, (ii) Young's modulus is usually in the Pa-kPa range for biological samples and soft matter whereas the longitudinal modulus obtained from Brillouin is in GPa range, and (iii) parameters such as refractive index changes and material density must be taken into account7. The Brillouin linewidth (in Figure 1B) is another measure obtained from BM. It is related to the longitudinal loss modulus, giving insights into the viscosity of the sample; these properties can be correlated with viscoelasticity14. Thus, BM allows for the assessment of the viscoelastic properties, where a larger BFS implies a stiffer material, and a larger linewidth implies a more viscous material (Figure 1B). It should be noted that elastic (Rayleigh) scattering, where the photons do not undergo a frequency shift, has a significantly larger likelihood of occurring compared to Brillouin scattering. Therefore, Brillouin spectrometers must be equipped to suppress the Rayleigh signal.
BM has been used to characterize the mechanical properties of various tissues, biomaterials, and 3D cell culture models. For example, BM was utilized to differentiate between melanoma and the surrounding healthy tissue, showing that the non-cancerous tissue was significantly softer than the melanoma15. Rad et al. showed that increasing the polymer concentration of hydrogels resulted in increased BFS and linewidth. At the lowest polymer concentrations, hydrogels with cells showed larger decreases in Brillouin frequency shifts over seven days compared to empty hydrogels, which was proposed to be due to cellular remodeling of the hydrogel. This was not observed at 10% polymer concentration, which underscored a possible lack of cell viability found in these hydrogels16.
Of most relevance to the present study, BM has been used to investigate the mechanical properties of spheroids17,18,19,20. In particular, the effect of the local microenvironment on spheroid mechanics can be detected using BM20. Compared to tumor spheroids cultured in compliant hydrogels, spheroids grown in stiff hydrogels exhibited a higher BFS, which is indicative of an increased elastic modulus20. Spatial variation of mechanical properties within a spheroid can also be characterized with BM. For example, the BFS of tumor spheroids has been found to increase towards the spheroid core20,21. Furthermore, a decrease in BFS correlates with increased invasiveness of tumor spheroids20. BM has been used to investigate the mechanical changes of tumor spheroids in response to osmotic shock22. In the study, spheroid growth was monitored over 5 days, finding that the initial mechanical differences between cancer and healthy spheroids observed with BM were lost with time. Another study found an increase in BFS of the spheroid after 7 days which was attributed to increasing spheroid size and number of cells16.
Furthermore, multimodal investigations, employing Brillouin microscopy alongside AFM and rheology, have been carried out to probe the mechanical properties of cells and hydrogels16,23,24. Rad et al. used rheology to contextualize the trends measured with BM, establishing a strong positive correlation between the longitudinal modulus and storage shear modulus with respect to the polymer concentration of hydrogels16. Brillouin microscopy and optical tweezer micro-rheology were used to measure the mechanics of cancer cells cultured in 3D hydrogels23. In this study, decreased mechanical heterogeneity was found among cells in spheroids compared to single cells grown suspended in hydrogels.
In this work, a protocol to investigate the mechanical properties of live spheroids embedded in hydrogels with a commercial Brillouin microscope is detailed (Figure 1). Berghaus et al. described a protocol detailing the steps to build a high-resolution Brillouin spectrometer and a method to calibrate it with reference materials25. Further, a protocol by Shi et al. describes the use of Brillouin microscopy to monitor the changes in the mechanical properties of embryonic tissue26. We use mesenchymal stem cell (MSCs) spheroids in poly(ethylene) glycol (PEG)-maleimide hydrogels to mimic the bone marrow niche and investigate the mechanical properties of this environment. This 3D model has the potential to uncover the mechanical signature of bone marrow diseases, including leukemia, multiple myeloma, and secondary bone cancer. The protocol is therefore directly transferable to 3D models of other diseases where disrupted mechanobiology may have an important role in the pathology. The spheroid and hydrogel preparation, fluorescence imaging, and Brillouin microscopy techniques are detailed. The recommended procedures, possible drawbacks, and potential improvements of the technique are discussed. The detailed experimental setup description is presented in Figure S1 and within the Supplementary Materials and methods section related to the experimental setup.