Here we outline a standardized method for generating single-cell clones from the JW18 D.melanogaster cell line, which can be applied to other Drosophila and insect cell lines. The protocol involves serial dilution of a prepared cell suspension across a 96-well plate to isolate individual cells. These cells are then incubated under optimal conditions to establish continuous cultures. The protocol also includes the addition of 20% conditioned media to promote cell survival and single-cell division45,46.
A critical step in the protocol is verifying the presence of a single cell in each well following serial dilution. This step requires meticulous attention, as it is essential for the success of the entire protocol. To facilitate future confirmation of the single-cell origin, capturing images of the selected wells from various angles is recommended.
Another key step involves transferring cells between culture dishes. To ensure the successful establishment of a continuous culture, cells should only be transferred once they have reached confluence. If cell growth stagnates for more than two weeks, refreshing the media can promote further growth. Premature transfer of cells before confluence may result in cell death.
While this protocol is more time-consuming and labor-intensive than other commonly used methods, such as Fluorescence-Activated Cell Sorting (FACS)38,46, it offers several advantages. These include cost-effectiveness, minimal risk of cell damage, no requirement for fluorescent markers, expensive equipment, and optimization time. Overall, this protocol is well-suited for generating homogeneous insect cell populations from continuous cell lines.
Properties of the monoclonal cultures
Our results show that the monoclonal cultures differ in terms of speed of their establishment and Wolbachia infection status (Figure 2, Figure 4, and Figure 5). Wolbachia-free clone JW18-C7 was the fastest one to reach confluence in our single-cell isolation protocol. Wolbachia could either have always been absent from this cell lineage, or it could have been lost due to the inability to keep up with the division rate of the host cell. It could also have been lost due to the initial low cell density in our cloning protocol. However, as this did not happen for the other clonal cell lines, we consider this unlikely. The experimental infection of JW18-C7 with Wolbachia (alongside other, tetracycline-treated clones) could answer whether this line is permissive to the symbiont.
The cellular heterogeneity is not unique to the JW18 cell line and has been reported before for other Wolbachia-infected cell lines32,47,48,49,50,51,52. A previous attempt at its amelioration involved a transfer of Wolbachia from D. simulans eggs or Aa23 cells to a C7-10 A. albopictus cell line53. C7-10 has been cloned many years prior to Wolbachia transfers54,55, and the transfers do not constitute the natural infection we intend to study.
The difference in Wolbachia infection status and time of monoclonal culture establishment (indicative of differences in cell division rate) for individual JW18 clones can have profound implications for previous studies linking Wolbachia titer and insect cell growth rate in response to specific treatments. Altered cell numbers, symbiont densities, or changes in gene expression upon treatment might result from selection for cell types with specific properties rather than changes in the state of all cells in a mixed population. Administering treatments to a mixed cell population with the variability in key characteristics may hence yield biased, unreproducible results.