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In this study, a fabricated system was coupled to hyperpolarized 13C NMR spectroscopy to measure pyruvate metabolism in live cells in real time. The main signals detected in the 1D 13C NMR spectrum corresponded to pyruvate (approximately 171 ppm) and lactate (approximately 183 ppm)21, allowing us to evaluate the metabolic conversion of pyruvate to lactate under physiological conditions (Figure 4).
Spectral quality and signal dynamics
Representative results from repeated measurements on the same sample using SCCVII cells—a mouse squamous cell carcinoma line frequently used in hyperpolarized MRI studies—are shown in Figure 5. The first measurement exhibited a clear increase in lactate signal, indicating active metabolic conversion. However, subsequent measurements taken at 1.5 h intervals showed a progressive decline in metabolic activity. This time-dependent reduction likely reflects biological stress or adaptation induced by the initial pyruvate injection. Notably, a similar transient metabolic modulation has been reported in vivo using hyperpolarized MRI and EPRI, where tumor oxygenation temporarily decreased following pyruvate administration22. These results demonstrate that the repeatability of these measurements enables non-destructive tracking of dynamic metabolic changes — an advantage that is difficult to achieve with destructive methods23.
To evaluate the applicability of this protocol to other cell types, additional measurements were conducted using HeLa cells, a widely used human cancer cell line. As shown in Figure 6, HeLa cells also displayed clear pyruvate-to-lactate conversion. Although signal intensity gradually decreased due to T1 relaxation, the signal-to-noise ratio remained sufficient throughout the 60 s acquisition period. These findings suggest that the current protocol is broadly applicable and can serve as a versatile tool for real-time metabolic profiling in various cell types.
While rapid signal decay is an inherent limitation of DNP-based NMR, our in situ mixing system minimizes the delay between dissolution and measurement, thereby enhancing detection sensitivity. Further refinements, such as optimizing the gel matrix composition, may expand the applicability of this method to a wider range of biological systems.

Figure 1: Schematic diagram of the overall workflow from cell culture to hyperpolarized NMR measurement. The process begins with cell culture (~2 weeks), followed by alginate gel preparation (~60 min) to encapsulate cells for stable measurement. Next, hyperpolarization is performed using a DNP polarizer system (~60 min), and NMR measurement is conducted using a 400 MHz NMR spectrometer (~5 min). The photographs on the right show the corresponding instruments used in this workflow. Please click here to view a larger version of this figure.

Figure 2: Bioreactor setup for hyperpolarized NMR measurement. (A) Schematic diagram of the bioreactor setup. The culture medium is introduced into the NMR tube through inlet A and subsequently directed to waste. Alginate beads containing live cells are placed inside the NMR tube. During hyperpolarized NMR measurements, the hyperpolarized probe is injected through inlet B, labeled as the hyperpolarized probe inlet. (B) Photograph of the entire bioreactor setup, with the inlet and outlet tubing clearly labeled. (C) Close-up view of the inlet tubing switch, showing inlet A (medium perfusion) and inlet B (hyperpolarized probe injection). (D) CAD design and (E) representative photograph of the 3D-printed sponge-fixing component placed inside the NMR tube. The component includes a hole for guiding a glass capillary that delivers the hyperpolarized substrate solution and a platform to hold a sponge. The component itself does not fit tightly against the inner wall of the NMR tube; (F) instead, a sponge is inserted around it to fill the gap. This structure stabilizes the component and allows the waste medium to flow upward through the sponge, eliminating the need for an additional outlet hole. Please click here to view a larger version of this figure.

Figure 3: Alginate gel preparation. (A) Schematic illustration and (B) photograph of the alginate gel ball formation apparatus. The left image shows the entire setup, including the centrifuge tube with a syringe fixed to its modified lid. The top-right image shows a lid with a small hole for the syringe tip, while the bottom-right image shows a lid with a square opening for stable syringe positioning. The centrifuge tube is pre-filled with 10 mL of calcium chloride solution, allowing the alginate solution exiting the syringe tip to undergo gelation, forming alginate gel balls. (C) Representative microscopic image showing the morphology of alginate gel balls. (D) Representative microscopic image showing the morphology of alginate gel balls containing HeLa cells. Scale bar = 200 µm. Please click here to view a larger version of this figure.

Figure 4: Schematic representation of the preparation steps for NMR measurement and hyperpolarization. During the ~60 min DNP buildup process, the NMR setup is performed in parallel to minimize delays. The preparation involves alginate bead loading into the NMR tube, followed by 1H lock adjustment, shimming, and probe tuning to ensure the system is ready for immediate measurement. After dissolution and in situ mixing, time-resolved 13C NMR spectroscopy reveals clear pyruvate and lactate peaks. The peaks observed at approximately 171 ppm, 179 ppm, and 183 ppm correspond to pyruvate, pyruvate hydrate, and lactate, respectively. Approximately 4 × 107 HeLa cells encapsulated in alginate gel were used for the NMR measurement. Please click here to view a larger version of this figure.

Figure 5: Time-resolved detection of pyruvate and lactate signals in repeated measurements. Hyperpolarized 13C NMR spectra of the same SCCVII cell-encapsulated sample were acquired at 1.5 h intervals to evaluate the feasibility of repeated non-destructive measurements. Pyruvate (open circles) and lactate (filled circles, scaled by 1000×) peak intensities are plotted over time for each acquisition. (A) First measurement. (B) The second measurement, after 1.5 h, reveals a marked reduction in lactate production. (C) The third measurement, after another 1.5 h, confirmed sustained low metabolic activity. Quantitative analysis based on the area under the curve (AUC) showed that the [Lactate]/[Pyruvate] ratio decreased from 0.00134 (first measurement) to 0.00019 (second) and 0.00027 (third). The final cell concentration in the alginate gel was approximately 1.0 × 107 cells/mL (4 × 107 cells in 4 mL). Please click here to view a larger version of this figure.

Figure 6: Conversion of pyruvate to lactate in HeLa cells. Time-resolved hyperpolarized 13C NMR signals of pyruvate and lactate were measured in live HeLa cells. The pyruvate signal intensity is normalized to its maximum value at time zero. The lactate signal intensity is scaled by a factor of 103 for visibility. Quantitative analysis based on the area under the curve (AUC) showed a [Lactate]/[Pyruvate] ratio of 0.00121. The final cell concentration in the alginate gel was approximately 7.5 × 106 cells/mL (3 × 107 cells in 4 mL). Please click here to view a larger version of this figure.
Supplementary Figure 1. Representative images of the vial septum used in the bioreactor system. (A) Silicone/PTFE septum (9 mm diameter) before use. (B) The same septum in actual use, with PEEK tubing inserted through punctured holes. The elasticity of the septum material allows it to reseal around the tubing, maintaining airtight conditions during hyperpolarized substrate injection. Please click here to download this figure
Supplementary Figure 2: Time-resolved hyperpolarized 13C NMR spectrum acquired after external mixing. Representative time-resolved spectrum of [1-13C] pyruvate metabolism measured using a benchtop NMR system after external mixing of hyperpolarized pyruvate and cells outside the NMR tube. Please click here to download this figure
Supplementary File 1: CAD design of the cylindrical holder. Please click here to download this file