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Research Article
Erratum Notice
Important: There has been an erratum issued for this article. View Erratum Notice
Retraction Notice
The article Assisted Selection of Biomarkers by Linear Discriminant Analysis Effect Size (LEfSe) in Microbiome Data (10.3791/61715) has been retracted by the journal upon the authors' request due to a conflict regarding the data and methodology. View Retraction Notice
Here, we present a protocol to simultaneously quantify both isotopically labeled and native retinoids in human plasma, using LC-MS/MS, with detection limits of 6 fmol on-column. The method incorporates a simple sample extraction procedure and a short analytical run time, enabling a high throughput of samples.
The retinol isotope dilution (RID) method estimates the total body stores (TBS) of vitamin A in humans through stable isotope dilution with the body's vitamin A pool. For this, it is critical to accurately and efficiently determine the plasma isotopic ratio of labeled to non-labeled retinol through mass spectrometry. To avoid extensive and time-consuming extraction and/or purification procedures, such as preparative HPLC and derivatization, LC-MS/MS is employed to conduct fast, sensitive, and simultaneous analysis of labeled and non-labeled retinoids. The method utilizes two levels of detection: (i) an initial mass/charge (m/z) separation of parent (precursor) ions, followed by (ii) detection of fragmented daughter (product) ions. This results in high sensitivity, with retinol detection limits as low as 6 fmol on-column. Despite the advantages of tandem mass spectrometry, a liquid chromatographic separation is required to separate retinol from retinyl esters since the terminal functional groups are lost during ionization, resulting in similar parent (m/z of 269) and daughter ion fragmentation patterns. The article describes the isolation of endogenous and labeled (13C or 2H) retinol from plasma by solvent extraction, followed by quantification by LC-MS/MS under atmospheric pressure chemical ionization (APCI) in positive ion mode.
Vitamin A is a fat-soluble nutrient essential for human health1. Vitamin A deficiency increases the susceptibility to severe infectious morbidity and mortality and is estimated to have a global prevalence of 29%, with higher levels in sub-Saharan Africa (48%) and South Asia (44%)2. Vitamin A supplementation is an effective strategy to reduce excess child mortality, particularly in high-risk areas such as sub-Saharan Africa3. However, the introduction of semi-annual vitamin A supplementation together with large-scale vitamin A fortification of staple foods and distribution of micronutrient powder, which are often managed through different public and private entities, has the potential to expose individuals to excessive vitamin A intake4,5,6,7,8,9,10. Thus, biomarkers of vitamin A should ideally be able to cover the whole spectrum of vitamin A status, from deficiency to toxicity. The retinol isotope dilution (RID) method is currently the most accurate indirect method for assessing total vitamin A body stores in humans11,12,13 and has been validated against hepatic vitamin A concentrations, considered the best biochemical marker of vitamin A status14,15. The method is based on the principle that an oral tracer dose of stable isotope-labeled vitamin A mixes with unlabeled vitamin A (the tracee) in exchangeable body pools. The measurement of plasma retinol specific activity (i.e., the ratio of labeled retinol tracer to total retinol in plasma (tracer/tracee in plasma)) at a specified time post-dosing allows for the estimation of vitamin A status using an RID equation11,12,13.
To determine accurate and precise concentrations of both retinol tracer and tracee in plasma, various methods have been applied to quantify stable isotope-labeled vitamin A, including gas chromatography-mass spectrometry (GC-MS), isotope ratio mass spectrometry (IRMS), and liquid chromatography tandem mass spectrometry (LC-MS/MS)16,17,18,19,20,21,22,23,24,25,26. Importantly, LC-MS/MS combines high sensitivity, specificity, and operational simplicity with the ability to directly measure both native and labeled retinol in complex matrices. Thus, to avoid time-consuming sample preparation, such as preparative high-performance liquid chromatography (HPLC) for IRMS or derivatization for GC-MS, LC-MS/MS analysis is an ideal choice since this method involves a simple extraction procedure, very low detection limits for stable isotopes, and short runtimes7,18,19. Here, we present an updated LC-MS/MS method with shorter run time, simple workflows combined with high sensitivity and selectivity as a highly suitable method for high-throughput analysis of samples from large-scale human intervention and observational studies, where the determination of total body stores of vitamin A is required.
The study was approved by the Research Ethics Board of the University of the Philippines, Manila (IRB ID: UPMREB 2016-282-01), the Institutional Review Board at UC, Davis (IRB ID: 903681-2), and was registered at ClinicalTrials.gov (ID: NCT03030339). The study was approved by the Ethical Review Committee of the Ghana Health Services (GHS-ERC 012/07/20), and the trial was registered at https://clinicaltrials.gov as NCT04632771.
1. Preparation of internal standards
2. Preparation of calibration standards
3. Extraction of retinoids from plasma
4. Preparation of internal standard control samples
5. Plasma house standards
6. External standard samples
7. Manual compound optimization
8. Product ion (MS2) scan / CE spectra check
9. MRM scan
10. Source/gas optimization
11. Liquid chromatography conditions
12. MS/MS conditions
13. Quantification of retinol
To illustrate the effectiveness of the analytical method to analyze stable isotope-labeled retinol across different chromatographic systems, we are presenting results from two different studies.
For using the API4000 with upfront HPLC, plasma samples from 111 Filipino children aged 12 to 18 months, who received a 400 µg (1.17 µmol) [13C10]retinyl acetate oral dose on day 0, followed by a 6 mL blood sample collection at 4 days post-dose, were analyzed7,28. Mean plasma total retinol concentrations were 1.1 µmol/L, and mean [13C10] retinol was 0.007 µmol/L. Since the background noise level within the m/z 279 to 100 transition had an average peak height of ~50 cps (Figure 1), the level of detection (LOD) and quantitation (LOQ) for [13C10] retinol were set at 150 cps and 500 cps, corresponding to 6 fmol and 19 fmol on column, respectively. Since good baseline resolution was obtained between the [12C] retinol and the applied internal standard of retinyl-acetate, there was no need to use a stable isotope-labeled retinyl-acetate.
A faster chromatographic separation can be achieved using UPLC in combination with the QTRAP 5500, with run times below 10 min. Depending on the research question, two different separation methods can be applied; (i) if the aim is to determine native and isotope labeled retinol applied with a non-labeled internal standard of retinyl-acetate, retention times between retinol (4.37 min) and retinyl-acetate (5.33 min) give good baseline separation (Figure 3); (ii) if the aim is to separate native and isotope labeled retinol alongside native and labeled retinyl-esters, good separation can be achieved within a 8.5 min run (Figure 4). However, due to the close retention times between retinol (2.10 min) and retinyl acetate (2.43 min), it is advisable to use isotopically labeled retinyl acetate ([2H4] retinyl acetate) instead. In this example, serum samples were analyzed from 80 Ghanaian women of reproductive age who received a 2 mg retinol equivalent dose of [2H6] retinyl acetate, followed by blood sample collection at 21 days post-dose. Mean serum total retinol concentrations were 1.89 µmol/L, with mean [2H6] retinol at 0.027 µmol/L and mean [13C10] retinol at 0.025 µmol/L.
The presented method achieved a low level of detection (LOD = 6 fmol; LOQ = 19 fmol on column), demonstrating high sensitivity and specificity for detecting stable isotope-labeled retinol with clear baseline separation between native retinol and internal standards. Furthermore, the method worked effectively with both HPLC and UPLC setups, despite differences in retention times. The use of isotopically labeled internal standards ([2H4] retinyl acetate) ensured accurate quantification under faster UPLC conditions, if retinyl-esters need to be determined. Validation against NIST-certified reference standards confirmed accuracy, whilst intra-day and inter-day coefficients of variation (2.3% and 4.4%, respectively) demonstrated excellent precision and reproducibility. Successful analysis of plasma/serum samples from two distinct populations (Filipino children and Ghanaian women) with different dosing protocols shows robustness and practical utility in diverse nutritional studies.

Figure 1: LC-MS/MS chromatogram using the API4000 mass spectrometer. The chromatogram of serum retinol was obtained 4 days after oral ingestion of 0.4 mg of [13C10] retinyl acetate. Selected reaction monitoring (SRM) of m/z 269 to 93 shows the separation of [12C] retinol (RT = 5.06 min) and [12C] retinyl acetate (RT = 5.83 min) as an internal standard (IS). The [13C10] retinol signal at m/z 279 to 100 sufficiently exceeds both the limit of detection (LOD) and the limit of quantitation (LOQ). Chromatographic conditions: (A) binary mobile phase gradient of 0.1% (v/v) formic acid in dH2O and (B) 0.1% (v/v) formic acid in acetonitrile; flow rate of 0.4 mL/min with a linear gradient of: 60% B to 95% B in 6.0 min; 100% B from 6.1 min to 13.0 min; 100% B to 60% B from 13.1 to 14.0 min; and 60% B from 14.0 to 17.0 min; 100 mm x 2.1 mm (3 µm) ABZ PLUS column, fitted with a 4 mm x 2 mm C18 cartridge maintained at 40 °C. Please click here to view a larger version of this figure.

Figure 2: APCI-MS/MS product ion mass spectra. Flow-injection APCI-MS/MS product ion mass spectra of (A) m/z 269 [12C] retinol, (B) m/z 273 [2H4] retinol, (C) m/z 275 [2H6] retinol, and (D) m/z 279 [13C10] retinol in positive ion mode. Please click here to view a larger version of this figure.

Figure 3: LC-MS/MS chromatogram using the QTRAP 5500 mass spectrometer. LC-MS/MS chromatogram of a typical extract from a plasma house standard sampled 21 d after oral ingestion of 1.0 mg of [2H6] retinyl acetate and 90 d after oral ingestion of 1.0 mg of [13C10] retinyl acetate. Selected reaction monitoring (SRM) of m/z 269→93 shows the [12C] retinol peak (RT = 4.37 min) and retinyl acetate (RT = 5.33 min) as internal standard (IS); the [2H6] retinol (RT = 4.36 min) at m/z 275→96; and the [13C10] retinol peak (RT = 4.38) at m/z 279→100. Chromatographic conditions: (A) binary mobile phase gradient of 0.1% (v/v) formic acid in dH2O and (B) 0.1% (v/v) formic acid in acetonitrile; flow rate of 0.4 ml/min with a linear gradient of: 40% B to 60% B in 1.0 min; 60% B to 95% B from 1.0 min to 6.0 min; 100% B from 6.5 min to 7.5 min; 100% B to 40% B from 7.5 to 7.6 min; and 40% B from 7.6 to 8.5 min; 100 mm x 2.1 mm (1.7 µm) AcquityTM Premier BEH Shield RP18 VanGuard FIT column, maintained at 50°C. Please click here to view a larger version of this figure.

Figure 4: LC-MS/MS chromatogram of retinol and retinyl-esters using the QTRAP 5500 mass spectrometer. LC-MS/MS chromatogram of a typical extract from a plasma house standard sampled 6 h after oral ingestion of 1.0 mg of [2H6] retinyl acetate and 90 d after oral ingestion of 1.0 mg of [13C10] retinyl acetate. Selected reaction monitoring (SRM) of m/z 269→93 shows the [12C]retinol peak (RT = 2.10 min); the [2H4]retinyl acetate at m/z 273→94 (RT = 2.43 min) as internal standard (IS); the separation of [2H6]retinol (RT = 2.09 min) and [2H6]retinyl palmitate (RT = 5.11 min) peaks at m/z 275→96; and the [13C10]retinol peak (RT = 2.10) at m/z 279→100. Chromatographic conditions: (A) binary mobile phase gradient of 0.1% (v/v) formic acid in dH2O and (B) 0.1% (v/v) formic acid in acetonitrile; flow rate of 0.4 ml/min with a linear gradient of: 60% B to 95% B in 3.0 min; 100% B from 3.5 min to 6.5 min; 100% B to 60% B from 6.5 to 7.0 min; and 60% B from 7.0 to 8.5 min; 100 mm x 2.1 mm (1.7 µm) AcquityTM Premier BEH Shield RP18 VanGuard FIT column, maintained at 50 °C. Please click here to view a larger version of this figure.
| Parameters | |
| Molar absorptivity (ɛ) of retinol in ethanol: | 52,770 M-1 cm-1 |
| Dilution factor: | 100 (100µL of stock calibration standard in 10mL of ethanol) |
| Measured average absorbance: | 0.575 |
| Calculation | |
| Concentration (mol) of [12C]retinol in ethanol: | Concentration (mol) = Absorption / ɛ x Length of cuvette |
| = 0.575 / 52770 M-1 cm-1 x 1 cm = 1.09 x 10-5 M | |
| Correcting for dilution: | 1.09 x 10-5 M x 100 = 1.09 x 10-3 M or 1.09 mM |
Table 1: Determination of the calibration standard retinol stock concentration.
| Analyte | MRM transitions (m/z) | Declustering potential (V) | Entrance potential (V) | Collision energy (eV) | Collision exit potential (V) |
| [12C]-retinol/esters | 269→93 | 51 | 10 | 27 | 6 |
| [2H4]retinyl acetate | 273→94 | 51 | 10 | 27 | 6 |
| [2H6]retinol/esters | 275→96 | 51 | 10 | 27 | 6 |
| [13C10]-retinol/esters | 279→100 | 41 | 10 | 27 | 6 |
Table 2: Selected reaction monitoring (SRM) parameters. Parameters for [12C] retinol, [13C10] retinol, and [2H6] retinol and their respective esters using the API4000
| Analyte | MRM transitions (m/z) | Declustering potential (V) | Entrance potential (V) | Collision energy (eV) | Collision exit potential (V) |
| [12C]-retinol/esters | 269→93 | 94 | 10 | 33 | 8 |
| [2H4]retinyl acetate | 273→94 | 54 | 10 | 20 | 11 |
| [2H6]retinol/esters | 275→96 | 69 | 10 | 25 | 3 |
| [13C10]-retinol/esters | 279→100 | 102 | 10 | 35 | 9 |
Table 3: Selected reaction monitoring (SRM) parameters. Parameters for [12C] retinol, [13C10] retinol, and [2H6] retinol and their respective esters using the QTRAP 5500
The presented LC-MS/MS method offers extremely high sensitivity, with detection limits as low as 6 fmol/L, thereby enabling investigators to use as little as 100 - 200 µL of plasma19. This targeted tandem MS method is particularly powerful for confirmation of retinoid isotopologue identity when both quantifier and qualifier product ions are utilized18. However, since isotope-labeled retinoids are present at substantially lower concentrations than physiological non-labeled retinoids, plasma samples containing labeled retinol and retinyl esters may require an additional concentration step. This necessity depends on factors such as the timing of the post-dose application blood sample, the concentration of oral tracer, and the sensitivity of the LC-MS/MS system. Historically, higher doses of applications were used to overcome the lower sensitivity of earlier mass spectrometers, but recent advancements have facilitated the use of lower doses13. In the presented examples, a higher oral dose increases the level of stable isotope-labeled retinol even at later time points, i.e., at 21 days versus 4 days.
Since the terminal functional groups of retinyl esters are lost during ionization, the same parent m/z of 269 and similar daughter ion fragmentation patterns are observed for both retinol and retinyl esters. Therefore, chromatographic separation is crucial to determine their separate concentrations18. Furthermore, due to the high natural abundance of 13C stable isotopes in endogenous retinol isotopologues, it is recommended to incorporate more than three 13C atoms into the retinol tracer to avoid the need to correct for baseline natural 13C enrichment of retinol in human plasma29.
Plasma samples require processing prior to isotope analysis in two steps. First, plasma samples need to be deproteinized, followed by the extraction of retinol and retinyl esters using a non-polar solvent, which creates a biphasic system18,19,20. Although a clear phase separation is obtained using the above protocol, it is critical that the interphase in the biphasic system is not disturbed or collected, as this will increase the drying time and will reduce the accuracy of the analysis. Alternatively, our group has also explored the application of a single-phase extraction procedure for retinoids20. For this, 200 µL plasma samples are pipetted into a 2 mL plastic micro-centrifuge tube, and retinoids are extracted using a combination of ethanol and ethyl acetate. Applying this extraction protocol allows the analysis of retinol and more polar retinoids, such as retinoic acid isomers, with equivalent recovery compared to the biphasic extraction, and is also comparable to the one-step acetonitrile extraction method of Kane and Napoli30.
Given that retinoids are susceptible to oxidation and isomerization when exposed to UV light and heat, it is crucial to perform the analysis as quickly as possible, and general precautions should be taken during the collection, handling, and storage of plasma30. Traditional methods for analyzing stable isotope-labeled retinoids employ time-consuming isolation and/or derivatizations. GC-MS analysis requires isolating the retinol fraction from human serum using high-performance liquid chromatography (HPLC), followed by the derivatization of retinol22. Although derivatization is not needed for GC-C-IRMS, prior separation of retinol using two separate HPLC purification steps is recommended17,25,31, and the determination of baseline natural 13C enrichment of retinol in human plasma in the sample population is also required17,32. In contrast, the presented LC-MS/MS method has several advantages. It avoids extensive and time-consuming extraction and/or purification procedures, enabling fast, sensitive, and simultaneous analysis of retinyl esters and free retinol16,18,26,32. Furthermore, the method is effective because it provides high accuracy with low variability and is adaptable to different LC-MS/MS systems.
The authors have nothing to declare.
Support for this work was provided by the Bill & Melinda Gates Foundation (Project Number: OPP1115464) and the International Atomic Energy Agency (IAEA) in Vienna (Project Number E4.30.30).
| Solvents | |||
| Absolute ethanol HPLC grade | Fisher | 10428671 | |
| Acetonitrile HPLC grade | Fisher | 10660131 | |
| Hexane 95% n-Hexane for HPLC CertiFied HPLC | Fisher | H/0406/17 | |
| Isopropanol HPLC grade | VWR | 20880.32 | |
| Isopropanol HPLC grade | VWR | 20880.32 | |
| Methanol 99% 2.5 L | Thermo Scientific | 11367996 | |
| Standards/isotopes | |||
| all-trans-retinol | BioXtra | 95144 | |
| Retinyl acetate | Sigma | PHR1236 | |
| Stable isotope labelled retinol: | ReseaChem/Buchem BV | ||
| Stable isotope labelled retinyl acetate: | ReseaChem/Buchem BV | N/A | A range of stable isotopes can be used for the RID method. A list of different commercially available isotopes are given in Table 1. |
| Vitamin A (19,19,19,20,20,20-D6) | |||
| Vitamin A (8,9,10,11,12,13,14,15,19,20-13C10) | |||
| Vitamin A acetate (10,19,19,19-D4) | |||
| Vitamin A acetate (19,19,19,20,20,20-D6) | |||
| Vitamin A acetate (8,9,10,11,12,13,14,15,19,20-13C10) | |||
| Equipment | |||
| 5ml Adjustable solvent dispenser | Sigma-Aldrich | Z627607-1EA | |
| ABI 4000 LC-MS/MS. | AB Sciex | ||
| Analytical weighing scales | Fisher | 13592970 | |
| Capillary pistons (pipette tips) CP100 10x96 TIPACK | Gilson | FD148314 | |
| Capillary pistons CP250ST 6x96 | Gilson | F148714 | |
| Fume cabinet | |||
| Microman E M100E Pipette (positive displacement) | Gilson | FD10004 | |
| Microman E M250E Pipette (positive displacement) | Gilson | FD10005 | |
| Pipetman P100, 10-100ul, metal ejector | Gilson | F114057M | |
| Pipetman P1000, 100-1000ul, metal ejector | Gilson | F114059M | |
| Pipetman P20, 2-20ul, metal ejector | Gilson | F144056M | |
| QTRAP 5500 LC-MS/MS | AB Sciex | ||
| Refrigerated Centrifuge 5810 R | Eppendorf | ||
| Sonicating water bath | VWR | USC100T | |
| Spectrophotometer | Thermo Fisher Scientific | A51119600C | |
| Techne sample concentrator and heat block. | VWR | ||
| Vibrax VXR Basic Shaker | IKA | 0002819002 | |
| Vortex mixer; MS3 basic IKA | Fisher | MPR-555-050L | |
| VX2 test tube attachment - werke typ VX2 | IKA | 0000568900 | |
| Consumables | |||
| 1.5ml microcentrifuge tubes | Fisher | FB74323 | |
| 100 mm x 2.1 mm (1.7 μm) AcquityTM Premier BEH Shield RP18 VanGuard FIT column | Waters | 186009498 | |
| 100 mm x 2.1 mm (3 µm) Supelcosil ABZ PLUS column | Supelco | 57917 | |
| 1000ul pipette tips | Starlab | S1122-1830 | |
| 100ml volumetric flasks | Fisher | 11323644 | Pyrex Borosilicate Glass Class A Certified Volumetric Flask |
| 200ul pipette tips | Starlab | S1120-8810 | |
| 4 mm x 2 mm SecurityGuard C18 cartridge | Phenomenex | AJ0-4286 | |
| 50ml volumetric flasks | Fisher | 11313644 | Pyrex Borosilicate Glass Class A Certified Volumetric Flask |
| 9mm amber glass vials with inserts | Fisher | 11583680 | |
| 9mm vial screw thread caps | Fisher | 13206419 | |
| Cardboard cryobox | Starlab | A9623-8181 | |
| Hellma cuvette UV quartz | SLS | CEL1600 | |
| Nitrogen gas (highest purity and oxygen-free) | BOC | ||
| Pasteur Pipette | Fisher | 11546963 | |
| Pyrex culture tubes 100x16mm | Corning | CLS9944916 | |
| Screw caps PTFE liner 16mm | Corning | CLS999815 | |
| Vial glass amber 2ml PTFE caps | Fisher | 11573542 | |
| Vial screw cap 9mm silicone white/PTFE red | Thermo | 13206419 |