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Method Article

Oral Gavage in Neonatal Mouse Pups and Functional Assessment of Gut Barrier Integrity Using Ussing Chambers

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DOI:

10.3791/69751

January 9th, 2026

In This Article

Summary

This article describes: (1) oral gavage delivery of test molecules to neonatal mice as early as DOL 6; and (2) ex vivo evaluation of colonic epithelial barrier function in biopsies from DOL 10 to weaning (DOL 20) pups by assessing paracellular and transcellular permeability with Ussing chambers.

Abstract

Growing evidence underscores the importance of the first 1,000 days of life in shaping the gut-microbiome axis. This early-life window is critical in the establishment of long-term physiological trajectories and immunological adaptations, potentially influencing susceptibility to diseases linked to dysbiosis and barrier dysfunction. A deeper understanding of the underlying mechanisms requires a comprehensive assessment of key physiological parameters, including paracellular and transcellular permeability of the neonatal gut. Evaluating these parameters is essential to elucidate how early exposures to exogenous molecules may influence gut integrity and long-term health outcomes. Therefore, the first part of this article describes the oral administration of molecules of interest in mouse pups as early as day of life 6, while minimizing stress, risk of injury, and cannibalism. Lubricated, rounded-tip 24-G feeding needles are used to gavage mouse pups weighing a minimum of 2.5 g. The second part outlines the ex vivo assessment of paracellular and transcellular permeability using Ussing chamber assays on colonic samples from pups between DOL-10 and weaning. Pinless sliders adapted for small biopsies are used in combination with Ussing chambers to mount neonatal colonic samples. The paracellular probe FITC-Dextran 4 kDa and the transcellular marker horseradish peroxidase 44 kDa Type VI are added to the apical compartment of the system at the start of the assay. Samples are collected in the basolateral compartment at 0 min, 30 min, 60 min, 90 min, and 120 min to quantify probe passage. The passage of both markers is quantified directly (FITC) and indirectly (HRP) by a plate reader, calculated using standard curves, and expressed as flux.

Introduction

Gut barrier integrity plays a fundamental role in maintaining overall health by coordinating mucosal immune response and regulating the selective permeability of the intestinal epithelium. This barrier system controls the passage of nutrients while preventing the translocation of pathogens, antigens, and toxins into systemic circulation1. Chronic disruption of this interface, associated with increased intestinal permeability, commonly referred to as "leaky gut", is now identified not only as a consequence but also as a driver of chronic inflammatory states and a range of extra-intestinal pathologies2.

For instance, compromised gut barrier function has been shown to be a key component of autoimmune and metabolic disorders such as inflammatory bowel disease (IBD), juvenile idiopathic arthritis (JIA), and type 1 diabetes (T1D). This highlights the gut barrier state as a key biomarker, but also as a therapeutic target to prevent the initiation of pathophysiological processes as early as possible and to prevent the progression of acute inflammation to a chronic state3,4,5,6.

In this context, the neonatal period represents a unique and highly sensitive window of development during which the establishment and maturation of the gut-microbiota interface profoundly influence lifelong intestinal and systemic health7. At this early stage, the intestinal epithelium and immune system display heightened sensitivity to both endogenous and exogenous factors, undergoing rapid growth and differentiation while simultaneously adapting to microbial colonization and dietary changes. Disruptions impairing gut barrier integrity during this critical developmental window may play a pivotal role in the onset of a wide spectrum of acute and chronic disorders later in life. These conditions include immune-mediated diseases such as food allergy, and more severe chronic illnesses, such as IBD, JIA, and T1D7,8,9. These diseases underscore how pathophysiological processes often originate early, as the primary onset generally occurs between childhood and early adulthood10,11. Therefore, understanding the mechanisms that govern gut barrier function in neonates is essential for developing preventive and therapeutic strategies aimed at reducing the burden of many chronic diseases.

Given this context, there is a pressing need for reliable, physiologically relevant tools to study gut barrier integrity, chronic disease mechanisms, and inflammation specifically within the neonatal setting. Such tools must allow the replication of experimental assays already proven in the adult context without sacrificing precision and efficacy. Additionally, it is becoming increasingly urgent to investigate both short- and long-term effects of many molecular candidates of interest, which are expected to have beneficial or harmful effects on gut homeostasis in the neonatal context. Among the tools available, oral gavage administration in neonatal mouse pups represents a more than reliable method of delivering molecules of interest at a defined developmental stage. It allows for controlled investigations into the effects of various bioactive compounds, drugs, or microbial metabolites on gut maturation and barrier function.

The first part of this article describes a method for gavage of mouse pups as early as Day Of Life (DOL) 6, allowing the study of interventions before, during and after the massive expansion of the gut microbiota species numbers induced by food diversification. Thus, this technique enables longitudinal analyses of treatment effects on intestinal health as pups grow and develop.

In the second part of this article and complementing this approach, ex vivo assessment of colonic epithelial barrier function using Ussing chambers provides a sensitive and quantitative measure of permeability characteristics. Evaluation of both paracellular and transcellular permeability in colon biopsies from neonatal mice (e.g., DOL 10 pups) allows for precise determination of the impact of several key candidates on epithelial barrier integrity and function. Paracellular transport is an essentially passive mechanism occurring through the intercellular space of the epithelial layer. It allows for the passage of small solutes driven by electrochemical and osmotic gradients from the lumen to the basolateral side. This mechanism is mainly regulated by proteins of the tight junction family, such as claudins and occludin. Transcellular transport, in contrast, is an active mechanism, allowing for the absorption of bigger solutes and occurring through the epithelial cells via specific channels, carriers, and pumps.

Fluorescein isothiocyanate (FITC)-dextran (4 kDa) predominantly undergoes paracellular transport due to its size, whereas horseradish peroxidase (HRP; 44 kDa) is selectively conveyed to the basolateral side via transcellular routes. Quantification of these non-endogenous markers thus enables distinct assessment of paracellular and transcellular permeability, respectively. The Ussing chamber assay with FITC and HRP preserves tissue architecture and allows real-time measurement of respectively paracellular and transcellular permeability of any segment of the intestinal tract. This combination of neonatal gavage and Ussing chamber analysis offers a powerful strategy to study how specific molecules impact gut barrier function both immediately and over longer timeframes, informing strategies to mitigate inflammation and prevent chronic disease from the earliest stages of life.

In summary, this protocol describes two complementary experimental procedures allowing for: (1) administration of molecules of interest in the early neonatal period to mouse pups (step 1); (2) assessment of both para and transcellular permeability in intestinal tract segments from neonatal to weaning pups using Ussing chambers (steps 2-6).

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Protocol

All animal procedures were conducted in accordance with the applicable national regulations and approved by the French Ministry of Higher Education, Research and Innovation via the APAFIS platform (Authorization number: APAFIS#23855) and grants from the Agence Nationale pour la Recherche (ANR): 11-IDEX-0005-02, ANR-24-CE15-7152, and 18-IDEX-0001. The reagents and the equipment used are listed in the Table of Materials.

1. Gavage of neonatal mouse pups

NOTE: The following method is adapted from Francis et al.12. While the original protocol permits gavage of mouse pups as early as DOL 2, gavage was not performed before DOL 6 here, as the technical demands at earlier ages make the procedure considerably more challenging. In addition, using younger pups complicates studies as it increases the risk of animal loss during the first days of treatment, thus requiring larger cohorts.

  1. Gavage solutions prep and setup
    1. Weigh each pup individually.
    2. Adjust the concentration and volume of the gavage solution so that the total volume administered does not exceed 20 µL per gram of body weight.
      NOTE: Under standard conditions, mouse pups rarely weigh less than 2.5 g at DOL 6.
    3. Wash a 24-G round-tip feeding needle by flushing it thoroughly with deionized water, followed by 70% ethanol using a syringe, then autoclave it.
      NOTE: It is recommended to use a separate feeding needle for each treatment group to prevent cross-contamination.
    4. Place clean paper towels on a disinfected heating pad set to ~38 °C.
    5. Wash gloves with 70% ethanol prior to opening the animal cages to limit odor transfer to the pups and reduce the risk of cannibalization.
    6. Transfer the dam to a separate cage in another room to limit stress caused by the pups' possible vocalizations.
    7. Rub cleaned gloves with nesting materials to limit the risk of transfer of external odors to the pups during gavage.
    8. Measure the length between the xiphoid process (lower end of the sternum) and the snout of a pup to mark the maximum insertion length on the feeding needle (Figure 1A,B).
  2. Intra-esophageal gavage of mouse pups
    1. Attach the head of the needle to a syringe in a sterile manner and draw more than the desired volume of gavage solution to administer the entirety of the required volume without any risk of administering air bubbles, as they dramatically increase the risk of aspiration.
      NOTE: Alternatively, draw up the gavage solution, then remove the air bubbles from the syringe by inverting it, drawing back on the plunger, and readvancing it to express air from the barrel of the syringe. Then, set the volume of the gavage solution to the exact volume to be administered.
    2. Using the thumb and index of the non-dominant hand, gently pinch the skin between the scapulas to lift the pup.
      NOTE: Do not draw too much skin from the pup's back, as this may induce suffocation.
    3. Hold the pup in a near-horizontal position and gently insert the feeding needle into the oral cavity, advancing it perpendicular to the pharynx until it reaches the back of the throat (Figure 1C).
    4. While keeping the same angle and depth, slide the needle to the right or left part of the oral cavity to avoid the tongue.
    5. Slowly adjust the angle of the needle while gently tilting the pup's head backward, until the syringe, head, and back are aligned, with the head slightly inclined toward the back (Figure 1D).
    6. Without applying any pressure, allow the syringe to descend slowly under its own weight until the maximum insertion mark is close to or reaches the snout level (Figure 1E).
      NOTE: If resistance is encountered, gently rotate the syringe by rolling it back and forth between the fingers to facilitate descent. If the syringe still does not advance, try adjusting the insertion angle or restart the procedure using a feeding needle lubricated with the gavage solution. The needle shouldn't remain inserted for more than 20 s to avoid asphyxiation.
    7. Once the maximum insertion mark is reached or close, quickly dispense the desired volume. If resistance is met whilst dispensing the volume, check the syringe-head-back alignment and slightly adjust the depth of insertion.
      NOTE: Quick dispensing of the volume is recommended, as prolonged needle insertion significantly increases the risk of suffocation, struggling, and potential injury to the animal.
    8. Once the correct volume is administered, gently withdraw the needle along the same angle used for insertion.
    9. Place the pup on the paper towel previously placed on the heating pad and monitor recovery. A normal breathing pattern should come back in less than 20 s.
      NOTE: Apparition of bubbles from the snoot or mouth of the animal indicates aspiration and requires immediate euthanasia in pups younger than DOL 14. The presence of a very small amount of blood in the mouth of the animal caused by a lesion between the oropharynx and esophagus requires monitoring of the animal, but not systematic euthanasia. If pup recovery is uncertain, place it on its side. If it does not attempt to right itself, euthanize immediately.
    10. Once recovery of the animal is confirmed, place the pup back in the nest and regroup it with its dam.
      NOTE: Up to DOL 10, pups have low mobility and can remain on the heating pad until gavage of every pup in the cage is completed. Older pups must not be left unattended on the pad, as they may try to escape.

Neonatal mouse injection technique; laboratory handling demonstration; experimental procedure.
Figure 1: Gavage of neonate mouse pup at DOL 10. The distance between the snout and xyphoid process is measured (A), allowing for marking of maximal insertion length on the feeding needle (B). The feeding needle is inserted into the left or right part of the oral cavity (C). Once the back of the throat is reached, the angle of the needle is adjusted until the syringe, head, and back of the animal are aligned (D). The needle is allowed to gently slide downwards without resistance until the maximum insertion mark is nearly reached or reached (E). Please click here to view a larger version of this figure.

2. Neonatal mouse pup euthanasia and colon retrieval

  1. Perform euthanasia using the appropriate method mandated by national legislation.
    NOTE: Decapitation of pups up to DOL 10 and cervical dislocation of pups of age superior to DOL 10 is recommended. Euthanasia with CO2 or anesthetics is not advised, as pups display a large tolerance to these methods.
  2. Place the euthanized animal under a binocular microscope.
  3. Apply 70% ethanol to the abdomen of the animal.
  4. Using forceps, pinch the abdominal skin and underlying peritoneum and make a large transverse abdominal incision using fine scissors (perpendicular to the rostral-caudal axis) without cutting the intestine.
  5. Gently insert the fine scissors into the incision and extend the cut laterally through the peritoneum on both sides.
  6. Using forceps and fine scissors, cut both superior and inferior parts of the peritoneum open, from the thoracic region to the lower pelvic area (Figure 2A).
  7. Identify the distal part of the colon and make an incision parallel to its axis, towards the rectum.
  8. Make an incision in the terminal/rectal portion of the colon to mobilize it.
  9. Gently pull the colon and progress towards the cecum, removing potential pieces of connective or fat tissue.
  10. Free the colon from the abdomen by cutting at the ileocecal junction, above the cecum (Figure 2B).
  11. Discard the cecum and the initial few millimeters of the proximal colon, then collect one to two samples from the proximal colon that are larger than the aperture size of the Ussing slider (Figure 2C).
    NOTE: Securing two over-sized biopsies is advised, as the neonatal colon is extremely fragile and can easily be torn, lacerated, or pierced during cleaning and mounting.
  12. With the scissors closed, gently remove the fecal content from the flattened biopsy by applying light pressure and sliding from the proximal to the distal end.
  13. Place the emptied colon piece in ice-cold KRB buffer.

Dissection experiment demonstrating mouse intestinal extraction process and sample comparison.
Figure 2: Dissection of the colon of DOL 10 pup. The epidermis and peritoneum of the pup are cut and opened in two steps to avoid unvoluntary incision of the colon, until the totality of the abdominal cavity is exposed (A). Colon is freed from the abdomen through a first cut of the distal/rectal section, followed by a second cut above the cecum (B). The initial millimeters of proximal colon are discarded, and one to two colonic samples larger than the aperture size of the Ussing sliders are collected (C). Please click here to view a larger version of this figure.

3. Colonic permeability assay using mouse biopsies in Ussing chambers

  1. Preparation of the assay
    1. On the day prior to the day of the Ussing experiment. To ensure optimal assay conditions, preparation of several solutions on the day before the experiment is recommended. These solutions are prepared as instructed in Table 1.
      NOTE: the following tables indicate the required amounts for 12 Ussing chambers, with KRB 10x in large excess to allow aliquoting.
      NOTE: The KRB 10x solution can be stored at 4 °C for up to 6-12 months.
    2. On experiment day, 30 min prior to animals' euthanasia:
      1. Prepare 400 mL of KRB buffer, as instructed in Table 2.
        NOTE: The KRB 10x, deionized water, and bicarbonate must be pre-mixed and bubbled using carbogen gas (95% O2; 5% CO2) for 15 min before adding CaCl2 to avoid precipitation.
      2. Using a carbogen system (95% O2; 5% CO2), bubble the fresh KRB buffer for 15 min.
      3. Split the 400 mL of KRB buffer into two and prepare 200 mL of Krebs-Glucose, 200 mL of Krebs-Mannitol, and the HRP solution as described in Table 3.
    3. Ussing system setup
      1. Pre-heat the Ussing System to 37 °C.
      2. Pre-assemble the chambers as follows:
        1. Lift the latches of each slot.
        2. Place the chambers in their slots without tightening the system.
        3. Insert the two gas-supplying tubes into each part of the chambers.
        4. Introduce the four electrodes in the front openings (if available - not covered here) or seal the four openings using 200 µL cones filled with glue ahead of the experiment.
        5. Place trays under the chambers in anticipation of potential leaks.
      3. Tissue mounting
        1. Lightly dry the previously cleaned colon sample with a paper towel to remove excess moisture.
        2. Place the piece of colon under a magnifying glass and very gently insert one of the blades of fine scissors in the luminal part to cut it open (Figure 3A).
          NOTE: The cut can be made in one movement once the scissors are fully inserted. The colon section used must be as straight as possible while avoiding torsion.
        3. Using fine forceps, mount the tissue on the white part of the slider while keeping the luminal part upwards, toward the operator. The tissue must be devoid of traces of fat, feces, wrinkles, perforations, and lacerations, and must widely cover the aperture (Figure 3B).
        4. Close the slider under the binocular microscope and check for potential displacement of the tissue. A slight deformation of the tissue must be visible when pressure is applied to the slider, which indicates that the slider is tightly closed.
          NOTE: Install the sliders in the Ussing chamber (Figure 4) and start the equilibration step individually as soon as it is ready, to prevent sample dehydration.
        5. While maintaining light pressure on the slider to keep it closed, insert the slider into the Ussing chamber, ensuring that the lumen (transparent part of the slider) faces to the left.
        6. Close both latches and tighten the screw located on the right until the chamber is airtight and the slider cannot move.
      4. Final setup and balancing
        1. Add 4 mL of Krebs-Mannitol to the left (apical) compartment of the chamber.
        2. Add 4 mL of Krebs-Glucose to the right (basolateral) compartment of the chamber.
        3. Place a small piece of parafilm between both compartments to avoid cross-contamination.
        4. Open the gas intake (95% O2 / 5% CO2) and set the output between 1-2 bubbles/s.
        5. Eliminate any large bubbles located on the tissue or in the system using a Pasteur pipette.
        6. Let the system balance for up to 20-30 min.
        7. Prepare the FITC 4kDa + HRP + Mannitol solution as described in Table 4.
  2. Starting the colonic permeability assay
    1. Once equilibrium of the system is reached, replace 200 µL of Krebs-Mannitol from the apical compartment (left) with 200 µL of FITC 4Kd + HRP + Mannitol solution and immediately start a timer. Wash the tip by doing gentle ups and downs in the compartment and discard the tip between each chamber.
    2. For each chamber, collect 2 x 100 µL (duplicates) from the basal (right) compartment and deposit the volumes in a black 96-well plate. Cover the plate with aluminum foil to avoid photodegradation of the FITC present in the plate.
    3. Immediately replace the 200 µL previously collected with 200 µL of fresh Krebs-Glucose.
    4. Repeat the steps (2) and (3) every 30 min until the 2 h time-point is reached, to obtain the time-points: T0, T30, T60, T90 and T120.
    5. Seal the plate with aluminum foil to avoid photodegradation of the FITC and proceed to FITC quantification.
MgCl2 1M
MW (g/mol)Final Volume = 20 mLFinal concentration
milli-Q H2OBring to final volume
MgCl2, 6H2O203.34.066 g1 M
KRB 10X
MW (g/mol)Final Volume = 1LFinal concentration
milli-Q H20Bring to final volume
NaCl58.4470 g1.198 M
KCl74.553.4 g45.6 mM
Na2HPO4 , 2H2O177.991 g5.62 mM
NaH2PO4 , 2H2O156.012.3 g14.7 mM
MgCl2 1M5 mL5 mM
Bicarbonate 750 mM
MW (g/mol)Final Volume = 250 mLFinal concentration
milli-Q H2OBring to final volume
NaHCO38415.75 g750 mM
CaCl2 2M
MW (g/mol)Final Volume = 50 mLFinal concentration
milli-Q H2OBring to final volume
CaCl211111.098 g2 M

Table 1: Solution preparation on the day prior to the Ussing experiment.

KRB Buffer (400 mL)
VolumeFinal concentration
KRB 10X40 mL1X
H2O (milli-Q)352 mL
Bicarbonate 750 mM8 mL15 mM
CaCl2 2M240 µL1.2 mM

Table 2: KRB buffer preparation on the day of the Ussing experiment.

Krebs-Glucose/Mannitol (200 mL each)
Final volume = 200 mLFinal concentration
KRB Buffer Bring to final volume
Glucose360 mg10 mM
or
Mannitol364 mg10 mM
HRP solution
Final volume = 1480 µLFinal concentration
Krebs-MannitolBring to final volume
HRP13 mg8.8 mg/mL

Table 3: Preparation of Krebs-glucose/mannitol and HRP solutions on the day of the Ussing experiment.

FITC 4kDa + HRP + Mannitol solution
For 12 chambersVolumeFinal concentration
HRP (8.8mg/ml)1345 µL
Krebs-Mannitol1155 µL
FITC 4Kd166.6 mg16.66 mM

Table 4: Preparation of FITC 4 kDa + HRP + mannitol solution on the day of the Ussing experiment.

Polymer encapsulation experiment; A: sample on tweezers, B: encapsulated material on surface.
Figure 3: Mounting of a colon sample from a DOL 9 pup. One blade of a fine pair of scissors is inserted in the luminal segment of the sample to cut it in one movement (A). The opened sample is mounted on the Ussing slider aperture with the luminal side facing towards the operator (B). Please click here to view a larger version of this figure.

Krebs solution diffusion, dual-chamber experimental setup, labeled diagram, cross-compartment study.
Figure 4: Picture of fully prepared Ussing chambers. Please click here to view a larger version of this figure.

4. Colonic para-cellular permeability assessment through FITC quantification

  1. FITC Standards preparation
    1. Dilute the FITC 4Kd + HRP + Mannitol solution in Krebs-Glucose to prepare the standard dilutions as described in Table 5 and Figure 5.
    2. Deposit 2 x 100 µL (duplicate) of each standard dilution from n°1 through n°7 in the plate. Seal the plate with aluminum foil to protect from light until plate reading begins.
  2. Data acquisition: Using a plate reader, set the excitation wavelength to 485 nm and emission to 535 nm, and read the plate as soon as possible.
    NOTE: Reading the plate at both optimal gain and with a manually set gain is advised to facilitate inter-plate values comparison and allow for interpolation of data if a mistake was made during standards dilutions.
  3. Plate storage: Once FITC quantification data has been stored, store the plates sealed with aluminum foil at 4 °C overnight if HRP quantification is to be conducted in the following days, or frozen at -80 °C for longer storage.

Serial dilution diagram, Krebs glucose experiment setup for concentration analysis.
Figure 5: Visual representation of FITC standard dilutions preparation. Please click here to view a larger version of this figure.

FTIC standard dilutions
1234567
Dilution 1:10000 of FITC stock solution1:2 of dilution n°11:2 of dilution n°21:10 of dilution n°11:2 of the dilution n°41:2 of the dilution n°5
Krebs-Glucose
FITC (µM)1.660.830.4150.1660.0830.04150

Table 5: Preparation of FITC standard dilutions on the day of the Ussing experiment.

5. Colonic trans-cellular permeability assessment through HRP quantification

  1. On the day prior to the day of the HRP quantification assay:
    1. Ensure optimal conditions on the day of the assay; preparation of several solutions is required on the day prior to the experiment. These solutions are prepared as described in Table 6.
      ​NOTE: The following tables indicate the required amounts for one 96-well plate.HRP Standards can be aliquoted and stored at -20 °C or -80 °C for up to several months. Due to instability, use only fresh carbonate/bicarbonate buffers.
    2. Upon Anti-HRP antibody solution preparation, immediately coat a Clear 96-well Clear Flat Bottom High Binding microplate with 100 µL per well. Wrap it in aluminum foil and incubate overnight at 4 °C.
  2. On the day of the HRP quantification assay:
    1. Prepare the 5% BSA Blocking buffer as described in Table 7.
    2. Discard the contents of the plate and wash with 280 µL of PBS Tween 4 times with 1 min of shaking at 350 rpm between each wash.
    3. Add 200 µL of BSA blocking buffer to each well.
    4. Seal the plate with aluminum foil and incubate on a shaker at 500 rpm for a minimum of 1 h. In the meantime, thaw and dilute samples (1:10 or 1:50) and prepare the standards dilutions as described in Table 8.
    5. Discard the contents of the plate and wash with 280 µL of PBS Tween 4 times with 1 min of shaking at 350 rpm between each wash.
    6. Add 50 µL of standard or diluted samples, seal the plate, and incubate at 300 rpm for 1 h at RT.
    7. During incubation, bring the QuantaBlu reagents to RT and prepare the working solution as described in Table 9.
    8. Discard the contents of the plate and wash with 280 µL of PBS Tween 4 times with 1 min of shaking at 350 rpm between each wash.
    9. Add 100 µL of QuantaBlu Working Solution to each well at RT or 37 °C (1.5-90 min, 30 min on average).
      NOTE: Assay progress can be followed by the appearance of a strong blue fluorescence under a UV light source.
    10. Add 100 µL of QuantaBlu Stop Solution to each well to stop the peroxidase activity. Seal plate and incubate for 10 min at RT under agitation at 350 rpm.
    11. Using a plate reader, set the excitation wavelength to 315 nm and emission to 470 nm. Read the plate as soon as possible.
      ​NOTE: Reading the plate at both optimal gain and with a manually set gain is advised to facilitate inter-plate values comparison and allow for interpolation of data if a mistake was made during standards dilutions. Alternatively to the QuantaBlu Fluorogenic Peroxidase Substrate kit, other peroxidase substrates such as Tetramethylbenzidine can be used (measured at 450 or 650 nm with or without the use of stop solution, respectively), but use of this alternative comes at the cost of lower sensitivity.
BSA solution
MW (g/mol)Final Volume = 12.7 mLFinal concentration
Milli-Q H2Bring to final volume
BSA664301.27 g100 mg/mL
Krebs-Glucose + BSA
MW (g/mol)Final Volume = 30 mLFinal concentration
Krebs-GlucoseBring to final volume
BSA solution60 µL0.2 mg/mL
PBS Tween
MW (g/mol)Final Volume = 500 mLFinal concentration
PBS 1XBring to final volume
Tween-20500 µL0.1%
Sodium carbonate sol.
MW (g/mol)Final Volume = 3.22 mLFinal concentration
Milli-Q H2OBring to final volume
Na2CO3105.9934.13 mg 0.1 M
Sodium bicarbonate sol.
MW (g/mol)Final Volume = 12.7 mLFinal concentration
Milli-Q H2OBring to final volume
NaHCO384106.68 mg0.1 M
Coating Buffer pH 9.6
Final Volume ≈ 11 mL
Sodium carbonate sol.2.58 mL
Sodium bicarbonate sol.Add until pH = 9.6 (~8.4 mL)
10 µM HRP Standard
Initial concentrationFinal volume = 5 mLFinal concentration
Krebs-GlucoseBring to final volume
HRP solution8.8 mg/mL50 µL0.088 mg/mL
BSA solution100 mg/mL10 µL0.2 mg/mL
1.5 nM HRP Standard
Initial concentrationFinal volume = 15 mLFinal concentration
Krebs-Glucose Bring to final volume
2,0 µM HRP Standard0.088 mg/mL2.25 µL13.2 ng/mL
BSA solution0.2 mg/mL3 µL40 ng/mL
Anti-HRP antibody solution
Initial concentrationFinal volume = 10 mLFinal concentration
Coating BufferBring to final volume
Anti-HRP antibody5.6 mg/mL8.93 µL5 µg/mL

Table 6: Solution preparation on the day prior to the HRP experiment.

BSA blocking buffer
Initial concentrationFinal Volume = 25 mLFinal concentration
PBS 1X12,5 mL
BSA solution100 mg/mL12.5 mL50 mg/mL

Table 7: BSA blocking buffer preparation on the day of the HRP experiment.

StandardKrebs-Glucose + BSA1.5 nM HRP StandardFmol HRP/50 µL
Blank1000 µL0 µL0
1993.75 µL6.25 µL0.09375
2987.5 µL12.5 µL0.1875
3975 µL25 µL0.375
4950 µL50 µL0.75
5900 µL100 µL1.5
6850 µL150 µL2.25
7800 µL200 µL3
8700 µL300 µL4.5
9600 µL400 µL6
10400 µL600 µL9
11200 µL800 µL12

Table 8: HRP standard preparation on the day of the HRP experiment.

QuantaBlu Working Solution
Final Volume = 12 mL
QuantaBlu Substrate Solution10.8 mL
QuantaBlu Stable Peroxide Solution1.2 mL

Table 9: QuantaBlu working solution preparation on the day of the HRP experiment.

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Results

Standard curve and well concentration quantification
The average value of blanks was subtracted from every well of the plate. With absorbance values on the Y axis and concentrations on the X axis, a standard curve was created using the "Interpolate a standard curve" function from GraphPad Prism. If all standard points are aligned, the "Line" model provides the best results. Alternatively, the "Sigmoidal, 4 PL, X is concentration" model offers great flexibility and accuracy with non-linear standard cu...

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Discussion

Oral gavage enables repeated administration of a precise, defined luminal dose to individual neonatal mice. In contrast, voluntary feeding, although a viable alternative, requires extended administration time per animal to deliver a lower compound quantity with reduced dosing precision12. Moreover, oral gavage accommodates larger volumes than those feasible via injectable routes, facilitating higher total doses at lower concentrations and thereby minimizing potential toxicity upon adminis...

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Disclosures

The authors declare that they have no competing financial interests.

Acknowledgements

This work was performed with financial support from ANR-11-IDEX-0005-02 Laboratoire d'excellence INFLAMEX, an award from the Fondation de l'avenir (2025, AP-RM-24-012), and ANR grants Diab1GUT (ANR-24-CE15-7152). The study was conducted within the context of the INFIBREX consortium and benefited from the support of the "France 2030" investment plan, launched by the French government and implemented by Université Paris Cité under its "Initiative of Excellence" IdEx program (ANR-18-IDEX-0001). We gratefully acknowledge the Ussing Chamber Technical Platform at the Inflammation Research Center for their invaluable support, and extend special thanks to Alexandra Willemtz and Maude Le Gall for their expert assistance.We would also like to express our sincere gratitude to the Animal Facility Platform at the Inflammation Research Center for their essential support, with special thanks to Isabelle Renault and Guillaume Anselmet.

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
10x DPBS W/O Ca & MgDulbeccos14200091
Anti-HRP antibodyNordic BiositeGTX10183Monoclonal Mouse Horseradish Peroxidase IgG [2H11]
Binocular loupeOlympus SZ61No specification required.
Black 96-well plate flat-bottomThermoFisher Scientific137101Plates must be black and adapted to fluoresence readings. Lid must be taken off during reading.
BSAMerckA4503
C57BL/6J miceCharles River632C57BL/6J 
CaCl2Merck2382
Clear 96-well Clear Flat Bottom High BindingCorning9018
D-(+)-GlucoseMerckG8270 
Distilled H2O
D-MannitolMerckM4125
Fine ForcepsFST11445-12
Fine ScissorsFST14058-09
FITC-Dextran 4KdFD4TdB LabsSensitive to photodegradation.
Heating padMinerve20 031 01
HRPMerckP8375
MgCl2, 6H2OMerckM2670 
Milli-Q H2O
P2300 EasyMount Ussing System & ChambersPhysiological InstrumentsEM6-C-CESystems, chambers and sliders must all be compatible.
P2306 Ussing Chamber SliderPhysiological InstrumentsPI-P2306Different models of sliders are available for different sizes and forms of tissues.
QuantaBlu Fluorogenic Peroxidase Substrate kitThermoFisher Scientific15169
Reusable Feeding Needles Round TipFST18061-2424 Gauge, 1.25mm tip diameter, round tip. Must be washed with sterile water, ethanol 70% and be autoclaved before use.
Sodium bicarbonateMerckS6297
Sodium carbonateMerckS7795
SpectrophotometerTECAN Spark 10MA plate reader with top-acquisition is required if the 137101 black plates are used.
Tween-20MerckP7949

References

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  18. Sjögren, E., Eriksson, J., Vedin, C., Breitholtz, K., Hilgendorf, C. Excised segments of rat small intestine in Ussing chamber studies: A comparison of native and stripped tissue viability and permeability to drugs. Int J Pharm. 505 (1), 361-368 (2016).
  19. Moussaoui, N., et al. Changes in intestinal glucocorticoid sensitivity in early life shape the risk of epithelial barrier defect in maternal-deprived rats. PLoS One. 9 (2), e88382(2014).
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  21. Birchenough, G. M. H., et al. Postnatal development of the small intestinal mucosa drives age-dependent, regio-selective susceptibility to Escherichia coli K1 infection. Sci Rep. 7 (1), 83(2017).

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Colonic PermeabilityFITC-Dextran AssayHorseradish PeroxidaseParacellular PermeabilityTranscellular PermeabilityMicroRNA Therapeutics