Here, we present a standard method for efficiently isolating adipose-derived stem cells and adipocytes, characterized by >90% reduction in processing time, high cell viability, and broad compatibility.
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Method Article
* These authors contributed equally
Here, we present a standard method for efficiently isolating adipose-derived stem cells and adipocytes, characterized by >90% reduction in processing time, high cell viability, and broad compatibility.
Adipose-derived stem cells (ADSCs) have emerged as ideal seed cells in regenerative medicine due to their abundant sources, minimally invasive harvesting, multi-lineage differentiation potential, and immunomodulatory properties. Their applications span tissue repair, disease modelling, and cell therapy; however, efficient isolation of high-viability ADSCs remains critical for advancing research and clinical translation. Conventional isolation methods, such as enzymatic digestion combined with mechanical dissociation via pipetting, are limited by lengthy processing times (1–3 h), poor cell viability (often <70%), and substantial batch-to-batch variability, compromising downstream experiments.
Here, we present the SoniConvert system (a mechanical wave-based cell separation system), which combines mechanical wave and enzymatic digestion to address these challenges. The system integrates a microprocessor-based control unit that regulates mechanical wave-mediated dissociation via digital feedback, together with a tissue-specific loosening reagent optimized for adipose tissue (5–15 min incubation). This approach enables rapid conversion of tissue to a single-cell suspension, with mechanical dissociation completed in 3–9 s.
The system offers three advantages: (1) ultra-fast processing, with the core isolation process—from enzymatic digestion to initial cell fraction separation—completed in approximately 30 min (>90% reduction compared to conventional methods); (2) high viability preservation, with trypan blue staining confirming cell viability of 80–95%, exceeding traditional protocols; and (3) broad compatibility, as the resulting single-cell suspensions meet requirements for primary cell culture, flow cytometry, cytotoxicity assays, and adipose organoid construction. By reducing processing time, enhancing cell integrity, and limiting variability, this system provides a practical platform for adipose-related research.
Adipose-derived stem cells (ADSCs), a critical subset of mesenchymal stem cells (MSCs) isolated from adipose tissue, exhibit substantial therapeutic potential due to their accessibility, minimally invasive harvesting, robust proliferative capacity, multi-lineage differentiation potential, and potent paracrine and immunomodulatory properties1,2,3,4. These attributes have positioned ADSCs as promising candidates for regenerative medicine, tissue engineering, and immunotherapy. However, the translational utility of ADSCs hinges on the ability to isolate functionally intact, high-purity populations—a process that remains technically challenging. Adipose tissue’s unique biology introduces two primary hurdles: (1) the high lipid content of adipocytes renders them prone to rupture during mechanical processing, releasing free lipids that contaminate the stromal vascular fraction (SVF) and compromise cell viability and yield5,6; and (2) the tissue’s structural complexity, comprising fascia, endothelial cells, immune cells, and blood components7, complicates the separation of adipose-derived cells. These limitations underscore the urgent need for an efficient, rapid, and viability-preserving method to isolate high-quality ADSCs and adipocytes, which are equally critical for downstream applications such as metabolic disease modeling and cell-based therapies.
Several established methods are currently available for isolating adipose-derived cells, including enzymatic digestion, explant culture, and mechanical separation8,9,10. Enzymatic digestion, the most widely adopted approach, employs collagenase to degrade extracellular matrix (ECM) components, releasing encapsulated stem cells. This method typically involves tissue mincing, collagenase digestion (37 °C, 1–2 h), SVF isolation via centrifugation, and adherent culture purification. While effective for ECM breakdown, enzymatic digestion suffers from notable drawbacks: prolonged processing time (3–4 h total), reliance on large sample volumes, and risks of enzymatic cytotoxicity or batch-to-batch variability from animal-derived collagenases—all of which hinder clinical translation. Explant culture, which leverages stem cell migration from tissue fragments, yields cells with preserved viability but suffers from low throughput and delayed cell recovery (7–10 days). Mechanical dissociation, which relies on physical disruption (e.g., oscillation, shearing), reduces processing time but often compromises cell integrity, leading to reduced viability and impure populations. Collectively, these methods fail to reconcile efficiency, purity, and viability—critical criteria for clinical-grade cell isolation. Thus, we propose a novel method for isolating adipose-derived cells (adipocytes and ADSCs) that combines enzymatic digestion with mechanical wave-mediated dissociation11. This approach achieves two key advancements: (1) time efficiency: by combining pre-optimized, animal-free enzyme cocktails with low-frequency mechanical waves, total processing time is reduced from 3–4 h to ~30 min (Figure 1); (2) viability preservation: gentle mechanical dispersion minimizes adipocyte rupture and lipid release. Importantly, the 30 min timeframe refers to the core isolation workflow (digestion, mechanical dissociation, filtration, and initial centrifugation) to obtain crude adipocyte and SVF fractions; optional downstream purification steps, such as Red Blood Cell (RBC) lysis, require additional handling time.
Our optimized adipose cell isolation method demonstrates significant potential for application across multiple research and clinical domains. In fundamental research, the obtained high-viability cells exhibit exceptional performance in adipogenic and osteogenic differentiation studies, providing a reliable cell source for tissue engineering applications. In translational medicine, clinical studies have demonstrated the therapeutic potential of ADSCs in treating conditions such as osteoarthritis12, cardiovascular diseases13, multiple sclerosis14, and inflammatory bowel disease (IBD)/Crohn's disease15. The rapidly isolated ADSCs serve as ideal building blocks for constructing adipose tissue organoids and implementing cell therapy applications, significantly advancing drug screening and disease modeling research. Furthermore, high-quality single-cell suspensions are suitable for single-cell RNA sequencing. In conclusion, this integrated approach establishes a robust technological platform for adipose tissue, supporting both basic research and clinical translation in regenerative medicine.
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All animal research was conducted in accordance with the Regulations for the Administration of Affairs Concerning Experimental Animals (Ministry of Science and Technology, China, revised in March 2017), and approved by the Animal Ethical and Welfare Committee of Sichuan Agricultural University (Permission number: 20230089). This protocol requires the use of the SoniConvert system, a commercially available device for mechanical wave‑assisted tissue dissociation (hereafter referred to as the mechanical dissociation system). The protocol is optimized for porcine adipose tissue, and its reliance on this specialized equipment is a key limitation.
1. Adipose tissue collection and preparation

Figure 2: Collection of pig ULB for cell isolation. (A) Illustration of the structure of pig back adipose tissue; (B) Cutting site of Bama minipig; (C) Presentation of back adipose tissue, pig back subcutaneous adipose contains two layers, the upper layer (ULB) and the inner layer (ILB); (D) Collected ULB. Abbreviation: ULB = upper layer of back; ILB = inner layer of back. Please click here to view a larger version of this figure.
Pause point: The collected adipose tissue can be kept in ice-cold sterile saline or D-Hanks solution at 4 °C for a short period before further dissection.
NOTE: The objective is to collect the ULB. Avoid including the inferior layer of back subcutaneous adipose tissue (ILB) during dissection.
2. Cell isolation and homogenization
3. Filtration to obtain a single-cell suspension
4. Downstream applications and analysis
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Figure 1: Schematic illustration of the adipose-derived cell isolation process. The diagram depicts the traditional method and the present method as illustrative workflows. Three main steps are involv...
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The present study introduces a novel integrated approach for isolating adipose-derived cells (mainly adipocytes and ADSCs) that addresses critical limitations of conventional methods. By combining tissue-specific enzymatic loosening with precision mechanical wave dissociation, this system achieves rapid (total processing time ~30 min), high-viability (80–95%), and reproducible cell isolation.
Conventional enzymatic digestion, while widely used, relies on prolonged collagenase incubation ...
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Author Ziyi Zhao and Jiaying Yu are affiliated with Chengdu DosSense Biotech Co., Ltd, which manufactures the SoniConvert system (SC-L1W) and the Adipose Tissue Dissociation Kit (TM008) used in this protocol. The other authors declare no competing interests.
This work was supported by grants from the National Natural Science Foundation of China (Li M: 32421005 and 32225046, Lu L: 32472857); the Science and Technology Projects of Xizang Autonomous Region of China (XZ202501ZY0147 to M.L.); the China Postdoctoral Science Foundation (Lu L: 2024M763881); the Chongqing Postdoctoral Special Funding (Lu L: 2023CQBSHTB3098); the National/Provincial Undergraduate Training Program on Innovation and Entrepreneurship (Lu L: 202510626001); and the Agricultural Science and Technology Major Project.
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| A Type Tissue Dissociation Kit | Docsense | TM001 | Contains A Type Tissue Dissociation Agent (A-Type Solution) and A Type Tissue Dissociation Buffer (A-Buffer). |
| Adipogenic Differentiation Medium Kit | OriCell | GUXMD-90031 | Used for adipogenic differentiation, including high-glucose Dulbecco's modified Eagle's medium (unmodified) and maintenance medium |
| Alizarin Red S | OriCell | A5533ALIR-10001 | Mineralization staining for osteogenic differentiation(pH 5.2) |
| Ascorbic acid | Sigma-Aldrich | A4544 | L-Ascorbic acid, cell culture tested, for osteogenic induction |
| Bama minipigs | Chengdu Dossy Experimental Animals Co.,Ltd | One year old, male, SPF-grade animals maintained under standardized vaccination, deworming, and cleaning procedures.https://www.cd-dossy.cn/animalpl_detail/12606067609851863 04.html | |
| Bio-Rad TC20 Automated Cell Counter | Bio-Rad Laboratories | 1450011 | Automated cell counter for viability and yield assessment |
| BODIPY | Thermo Fisher Scientific | D3922 | Neutral lipid stain |
| BSA (5%) | Sigma-Aldrich | A9418 | Bovine serum albumin, lyophilized powder, for blocking |
| Calcitriol | Sigma-Aldrich | C9756 | 1α,25-Dihydroxyvitamin D3, for osteogenic induction |
| cell sieve (70 μm) | Corning | 352350 | Falcon 70 μm cell strainer, sterile, for FACS sample prep |
| cell strainer (200 μm) | pluriSelect | 43-50200-03 | pluriStrainer, PET mesh, fits 50 mL tubes, sterile |
| centrifuge tube (50 mL) | Corning | 352098 | Falcon 50 mL high clarity conical tube, sterile, polypropylene |
| Counting slide (for Bio-Rad TC20) | Bio-Rad Laboratories | 1450011 | Dual-chamber counting slide for TC20 automated cell counter |
| culture dish (100 mm) | Corning | 430167 | Sterile polystyrene dish, for hanging drop organoid formation |
| Dexamethasone | Sigma-Aldrich | D4902 | ≥98%, for adipogenic and osteogenic induction |
| D-Hanks Balanced Salt Solution or PBS | Gibco | 10010015 | Pre-cooled to 4 °C, pH 7.4. |
| DMEM | Gibco | 11965084 | This is used for fresh isolated SVF cultivation |
| DNase I | Beyotime | D7073 | Optional, recommended if clumping is observed. |
| ethanol | Sigma-Aldrich | 459836 | 75% for surface disinfection. |
| Fetal Bovine Serum (FBS) | Gibco | A4736201 | Tet system approved, US origin, sterile |
| Flow Cytometer | BD Biosciences | BD FACSCanto II | 3 lasers (405 nm, 488 nm, 633 nm), 8 fluorescence channels, for surface marker analysis (CD73, CD90, CD11b, CD45), meets 70 m nozzle requirement at 20 psi |
| fluorescence microscope | Olympus | Inverted or upright model capable of FITC and DAPI filter sets. | |
| Fluorescent secondary antibodies | Thermo Fisher Scientific | A-11001 (anti-mouse), A-11008 (anti-rabbit) | Alexa Fluor conjugated, for immunofluorescence |
| Fluorochrome-conjugated antibodies (CD73, CD90, CD11b, CD45) | BD Biosciences | 561254 (CD73), 561970 (CD90), 557321 (CD11b), 555485 (CD45) | For flow cytometric analysis of ADSC phenotype |
| Hoechst | Thermo Fisher Scientific | H3570 | Nuclear stain for live/dead cell assessment. |
| IBMX | Sigma-Aldrich | I5879 | ≥99% (HPLC), for adipogenic induction medium |
| Ice-cold sterile saline | Baxter | 2F7124 | 0.9% Sodium Chloride Injection, USP, for rinsing tissue |
| Insulin | Sigma-Aldrich | I9278 | Recombinant, expressed in yeast, for adipogenic induction |
| iodophor | Sigma-Aldrich | 25104 | 2% disinfectant solution. |
| Matrigel | Corning | 354230 | Growth factor reduced, phenol red-free, for embedding spheroids |
| Metal Bath | Servicebio | SMB-H | Used for incubation at 37 °C. |
| Oil Red O | OriCell | OILR-10001 | Lipid staining for adipocyte differentiation |
| optical microscope | Olympus | Standard brightfield microscope with 10x–40x objectives. | |
| Osteogenic Differentiation Medium Kit | OriCell | GUXMD-90021 | Used for osteogenic differentiation, including high-glucose Dulbecco's modified Eagle's medium (unmodified) and maintenance medium |
| P1000 pipette with wide-bore tips | Beckman Coulter | B01113 | Biomek P1000 Span-8 wide bore tips, sterile |
| Paraformaldehyde (4%) | Thermo Fisher Scientific | J61899 | Aqueous solution, for fixing organoids |
| pasteur pipette | Corning | 7095S-5C | Sterile, disposable. |
| Penicillin-Streptomycin | Gibco | 15070063 | 10,000 U/mL penicillin, 10,000 μg/mL streptomycin, sterile |
| Pentobarbital sodium | Hikma Pharmaceuticals USA Inc. | 24201-010-20 | Injectable, for euthanasia (100 mg/kg body weight, intravenous). ANDA 203619 |
| Primary antibodies (CD73, CD90, CD11b, CD45) | BD Biosciences | 561254 (CD73), 561970 (CD90), 557321 (CD11b), 555485 (CD45) | For organoid immunostaining |
| Red Blood Cell (RBC) Lysis Buffer | Solarbio | R1010 | If required for downstream applications. |
| Refrigerated centrifuge | Eppendorf | 5702R | Used for centrifugation steps at 4 °C. |
| Rosiglitazone | Cayman Chemical | 71740 | ≥98%, PPARγ agonist for adipogenic induction |
| Sharps container | Becton Dickinson | 305270 | Puncture-resistant container for used blades and scissors |
| SoniConvert Single Cell Suspension Preparation System | Docsense | SC-L1W | Used for mechanical dissociation of tissue. |
| Staining Buffer (Flow Cytometry Staining Buffer) | eBioscience (Thermo Fisher Scientific) | 00-4222-57 | 200 mL, ready-to-use, contains FBS and 0.09% sodium azide as preservative, for antibody and cell dilution, surface staining and washing steps in flow cytometry |
| Sterile 1.5 mL Eppendorf tube | Eppendorf | 30121.517 | Safe-Lock microcentrifuge tube, sterile, for tissue mincing |
| Sterile culture dish | Corning | 430167 | 100 mm x 20 mm sterile culture dish, for tissue collection |
| Sterile forceps | Sklar | 96-1719 | Sterile thumb forceps, serrated, for tissue handling |
| Sterile gauze | Dukal Corporation | 7060033 | Sterile gauze pads, for disinfection and wiping |
| Sterile ophthalmic scissors | Sklar | 10023-580 | Vannas-style spring scissors, for mincing tissue into 1-2 mm³ pieces |
| Sterile razor | 3M | 9681 | Surgical prep razor, for hair removal from operative area |
| Sterile scalpel | Integra Miltex | 4-415 | Sterile disposable scalpel, for making incision |
| Sterile surgical scissors | Sklar | 10022-580 | Merit Sterile Iris Scissors, for dissecting blood vessels and connective tissue |
| T25 cell culture flask | Corning | 430639 | Falcon T25 cell culture flask, vented cap, sterile |
| Triton X-100 (0.1%) | Sigma-Aldrich | T8787 | Laboratory grade, for permeabilization |
| Trypan Blue | Gibco, Thermo Fisher Scientific | 15250061 | 0.4% solution for cell viability counting. |
| Trypsin-EDTA (0.25%) | Gibco | 25200056 | 0.25% trypsin, 1 mM EDTA, for detaching ADSCs |
| β-Glycerophosphate | Sigma-Aldrich | G9422 | Disodium salt pentahydrate, for osteogenic induction |
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