Data source and search strategy
To improve coverage and reduce source bias of the literature, four electronic databases were searched: Web of Science (including the Web of Science Core Collection, WoSCC), PubMed, Scopus, and Embase. The publication period was limited to January 1, 2016, to December 31, 2025. Only original research articles and review articles written in English were included. The search terms focused on two concepts: “diabetes mellitus” (DM) and “metabolic reprogramming”. The search strategies and all exclusion criteria used during the screening process are summarized in Figure 1.
The exact search strings used for each database are provided below:
Web of Science (WoSCC):
TS=((diabetes OR “diabetes mellitus” OR “type 1 diabetes” OR “type 2 diabetes” ) AND (“metabolic reprogramming” OR “metabolic remodeling” OR “glucose metabolism” OR “Warburg effect” OR “cellular metabolism” OR “mitochondrial dysfunction”))
*Filters: Publication years: 2016-2025; Document types: Article, Review; Language: English.*
PubMed:
(“diabetes mellitus”[Title/Abstract] OR “type 2 diabetes”[Title/Abstract] OR “type 1 diabetes”[Title/Abstract] OR “T2DM”[Title/Abstract] OR “T1DM”[Title/Abstract]) AND (“metabolic reprogramming”[Title/Abstract] OR “metabolic reprogram”[Title/Abstract] OR “ metabolic remodeling”[Title/Abstract] OR “Warburg effect”[Title/Abstract] OR “cellular metabolism”[Title/Abstract] OR “cellular metabolism”[Title/Abstract] OR “mitochondrial dysfunction“[Title/Abstract])
*Filters: Publication date: 2016/01/01 – 2025/12/31; Article type: Article, Review; Language: English.*
Scopus:
TITLE-ABS-KEY(“diabetes mellitus” OR “diabetes” OR “type 1 diabetes” OR “type 2 diabetes” OR “T1DM” OR “T2DM”) AND TITLE-ABS-KEY(“metabolic reprogramming” OR “metabolic reprogram” OR “mitochondrial dysfunction“ OR “metabolic remodeling“ OR “Warburg effect”)
*Filters: Publication year: 2016-2025; Document type: Article, Review; Language: English.*
Embase:
('diabetes mellitus'/exp OR 'diabetes mellitus':ab,ti OR 'type 2 diabetes':ab,ti OR 'type 1 diabetes':ab,ti) AND ('metabolic reprogramming':ab,ti OR 'metabolic reprogram':ab,ti OR 'Warburg effect':ab,ti OR 'metabolic remodeling':ab,ti)
*Filters: Publication year: 2016-2025; Document types: Article, Review; Language: English.*
All exclusion criteria used during the screening process are summarized in Figure 1. Records retrieved from each database were exported in plain text format, including full bibliographic information (title, authors, journal, publication year, abstract, keywords, and cited references).
Deduplication and Manual Screening Process
To ensure reproducibility, a stepwise deduplication and manual screening process was adopted: first, all plain text files exported from the four databases were imported into reference management software, and automatic deduplication was performed using the “References > Find Duplicates” function; then, the deduplicated records were exported to Excel format using the “Show All Fields” export style and manually screened based on titles and abstracts. The inclusion criteria were original research or review articles that clearly addressed diabetes (any type) and metabolic reprogramming (including glycolysis, oxidative phosphorylation, the Warburg effect, or mitochondrial metabolic adaptation), written in English. Exclusion criteria included editorials, letters to the editor, conference abstracts, case reports, animal studies unrelated to humans, and studies focusing solely on metabolic syndrome without addressing diabetes. Ultimately, 6,864 records were included in the bibliometric analysis (Supplementary File 1).
Software and methodologies for bibliometric analysis
This study employed three bibliometric analysis tools (Table of Materials) to systematically examine authors, institutions, sources, titles, keywords, cited references, and other detailed information from the articles. The raw data of the 6,864 studies (Supplementary File 1) served as the input for all three software tools. Bibliometric software #1 is a Java-based free software tool and assists researchers in analyzing, visualizing, and interpreting scholarly literature, knowledge networks, collaborative relationships, and research hotspots13. Bibliometric software #2 is a visualization tool for scientific bibliometrics and knowledge mapping, primarily employed to reveal development trends, research hotspots, and collaborative networks in academic fields14. Bibliometric software #3 is an R package for scientometric analysis and knowledge mapping, used to import, analyze, and visualize bibliographic data15. The detailed operating procedures and specific parameter settings for each software are provided in the Table of Materials.