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This study was performed using established human acute myeloid leukemia cell lines and their doxorubicin-resistant derivatives. No human participants, animals, or primary patient-derived samples were involved. Therefore, institutional review board approval for human-subject research and animal ethics approval were not required. The cell lines were obtained from the Institute of Hematology, Chinese Academy of Medical Sciences, Tianjin, China, and maintained at the Fujian Institute of Hematology, Fujian Medical University Union Hospital. Cell identity was confirmed by karyotype and morphological assessment prior to experimentation, and all cell cultures were tested for mycoplasma contamination. The chemicals, equipment, and software used in the protocol are listed in the Table of Materials.
1. Cell culture and confirmation of the resistant phenotype
Human HL60 and K562 acute myeloid leukemia cells and their doxorubicin-resistant derivatives, HL60/A and K562/A, were obtained from the Institute of Hematology, Chinese Academy of Medical Sciences, Tianjin, China. Cells were cultured in Roswell Park Memorial Institute 1640 medium supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin at 37 °C in a humidified incubator containing 5% carbon dioxide.
HL60/A cells were maintained in complete medium containing 1 µg/mL doxorubicin, and K562/A cells were maintained in complete medium containing 5 µg/mL doxorubicin to preserve the resistant phenotype. Doxorubicin was removed from the culture medium 1 month before experimental testing to avoid acute drug-selection effects during treatment assays.
Before the experiments, the resistant phenotype was reconfirmed by comparing doxorubicin half-maximal inhibitory concentration values between parental and resistant cells. Resistance stability after 1 month of drug-free culture was assessed by repeating the doxorubicin-sensitivity assay and examining basal P-glycoprotein and multidrug resistance-associated protein 1 expression. Cultures were used for experiments only when the resistant derivatives retained higher doxorubicin half-maximal inhibitory concentration values and higher transporter expression than their parental counterparts.
2. Drug preparation and treatment design
FTY720, doxorubicin, and SC79 were prepared as stock solutions according to the manufacturers’ instructions. FTY720 and SC79 were dissolved in dimethyl sulfoxide, and doxorubicin was prepared in the recommended solvent and protected from light during handling. Working solutions were freshly diluted in complete culture medium before treatment. The final dimethyl sulfoxide concentration was kept identical across treatment groups and did not exceed 0.1%.
Vehicle-control groups received the same final dimethyl sulfoxide concentration as the corresponding treatment groups. For combination-treatment experiments, 5 µM FTY720 was used as the sensitizing concentration. Doxorubicin was used at 4 µM for HL60/A cells and 8 µM for K562/A cells in apoptosis and intracellular doxorubicin accumulation assays, unless otherwise stated.
3. Cell viability assay and half-maximal inhibitory concentration calculation
Cells were seeded into 96-well plates at 1 × 104 cells per well in 100 µL complete medium. For FTY720 single-drug testing, HL60, K562, HL60/A, and K562/A cells were treated with 0, 3.125, 6.25, 12.5, 25, 50, and 100 µM FTY720 for 48 h. For doxorubicin-sensitivity testing, HL60/A and K562/A cells were treated with serial concentrations of doxorubicin in the presence or absence of 5 µM FTY720 for 48 h.
Cell viability was measured using the Cell Counting Kit-8 assay according to the manufacturer’s instructions. After treatment, Cell Counting Kit-8 reagent was added to each well, and the plate was incubated at 37 °C for 2 h. Absorbance was measured at 450 nm using a microplate reader.
Relative cell viability was calculated as follows: relative cell viability = [(absorbance of treated wells - absorbance of blank wells) / (absorbance of vehicle-control wells - absorbance of blank wells)] × 100%
Half-maximal inhibitory concentration values were calculated using nonlinear regression with a four-parameter logistic dose-response model in GraphPad Prism, version 9.5. Each experiment included three independent biological replicates, with three technical wells per treatment condition.
4. Drug-combination analysis
The effects of FTY720 on doxorubicin sensitivity were evaluated by comparing doxorubicin dose-response relationships in the presence or absence of FTY720. HL60/A and K562/A cells were treated with serial concentrations of doxorubicin alone or doxorubicin combined with FTY720 for 48 h.
Cell viability was assessed using the Cell Counting Kit-8 assay, and half-maximal inhibitory concentration values were calculated using nonlinear regression with a four-parameter logistic dose-response model. Changes in doxorubicin sensitivity were interpreted based on shifts in dose-response curves and differences in half-maximal inhibitory concentration values between treatment groups.
Because the experiments were not designed as a complete fixed-ratio dose-matrix study, formal combination-index analysis was not performed. Therefore, the results were interpreted as evidence of altered doxorubicin sensitivity rather than definitive pharmacological synergy.
5. Apoptosis analysis by Annexin V and propidium iodide flow cytometry
HL60/A and K562/A cells were seeded into 6-well plates at 4 × 105 cells/mL and treated for 48 h with vehicle, FTY720 alone, doxorubicin alone, or doxorubicin combined with FTY720. For combination treatment, 5 µM FTY720 was combined with 4 µM doxorubicin in HL60/A cells or 8 µM doxorubicin in K562/A cells.
After treatment, cells were collected, including cells suspended in the culture medium, and washed twice with cold phosphate-buffered saline. Cells were resuspended in Annexin V binding buffer at the concentration recommended by the apoptosis detection kit manufacturer. Each sample was stained with 5 µL Annexin V-fluorescein isothiocyanate or Annexin V-allophycocyanin and 5 µL propidium iodide, followed by incubation for 15 min at room temperature in the dark.
Samples were analyzed immediately by flow cytometry. Unstained controls, single-stained controls, and fluorescence-minus-one controls were used to set compensation and quadrant gates. Debris was excluded using forward-scatter and side-scatter gating. Early apoptotic cells were defined as Annexin V-positive and propidium iodide-negative cells, and late apoptotic or dead cells were defined as Annexin V-positive and propidium iodide-positive cells. Total apoptosis was calculated as the sum of early and late apoptotic cell fractions. At least 10,000 viable single-cell events were acquired for each sample.
6. Intracellular doxorubicin accumulation assay
HL60/A and K562/A cells were seeded into 6-well plates at 4 × 105 cells/mL and cultured overnight. Cells were then treated with vehicle control, doxorubicin alone, or doxorubicin combined with 5 µM FTY720. HL60/A cells were treated with 4 µM doxorubicin, and K562/A cells were treated with 8 µM doxorubicin. Cells were incubated for 4 h at 37 °C and protected from light.
After treatment, cells were harvested and washed twice with cold phosphate-buffered saline to remove extracellular doxorubicin. Cells were resuspended in phosphate-buffered saline and analyzed by flow cytometry using the intrinsic fluorescence of doxorubicin. Untreated cells were used to define background autofluorescence, and doxorubicin-treated cells were used as the fluorescence-positive reference. Intracellular doxorubicin accumulation was quantified as median fluorescence intensity after debris and aggregate exclusion. Median fluorescence intensity values were normalized to the doxorubicin-alone group within each independent experiment.
7. Flow cytometric analysis of P-glycoprotein and multidrug resistance-associated protein 1 expression
HL60/A and K562/A cells were seeded into 6-well plates at 2 × 106 cells/mL and treated with 5 µM FTY720 or vehicle control for 24 h. After treatment, cells were washed twice with ice-cold phosphate-buffered saline and resuspended in 100 µL cell staining buffer.
Cells were stained with phycoerythrin-conjugated anti-P-glycoprotein antibody and Alexa Fluor 647-conjugated anti-multidrug resistance-associated protein 1 antibody at the manufacturer-recommended dilution. Matched isotype controls, unstained controls, single-stained controls, and fluorescence-minus-one controls were included for gate setting and compensation. Samples were incubated for 30 min at 4 °C in the dark, washed twice with cell staining buffer, and resuspended in 500 µL cell staining buffer before acquisition.
Flow cytometry was performed using a BD FACScan flow cytometer. At least 10,000 viable single-cell events were acquired for each sample. P-glycoprotein and multidrug resistance-associated protein 1 expression levels were quantified as median fluorescence intensity after subtraction of the corresponding isotype-control signal. The normalized values were expressed relative to the vehicle-control group within each independent experiment.
8. Western blotting and densitometric quantification
After the indicated treatments, cells were collected and washed twice with cold phosphate-buffered saline. Total protein was extracted using radioimmunoprecipitation assay buffer supplemented with protease and phosphatase inhibitors. Protein concentration was measured using a bicinchoninic acid protein assay kit.
A total of 30 µg protein per lane was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. Membranes were blocked with 5% non-fat milk or 5% bovine serum albumin in Tris-buffered saline containing Tween 20 for 1 h at room temperature.
Membranes were incubated overnight at 4 °C with primary antibodies against total protein kinase B, phosphorylated protein kinase B, total mechanistic target of rapamycin, phosphorylated mechanistic target of rapamycin, cleaved caspase-3, cleaved poly(adenosine diphosphate-ribose) polymerase, P-glycoprotein, multidrug resistance-associated protein 1, and glyceraldehyde-3-phosphate dehydrogenase. After washing, membranes were incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature. Protein bands were visualized using enhanced chemiluminescence detection.
Band intensities were quantified using ImageJ software, version 1.53t. Phosphorylated protein kinase B was normalized to total protein kinase B, and phosphorylated mechanistic target of rapamycin was normalized to total mechanistic target of rapamycin. P-glycoprotein, multidrug resistance-associated protein 1, cleaved caspase-3, and cleaved poly(adenosine diphosphate-ribose) polymerase were normalized to glyceraldehyde-3-phosphate dehydrogenase. Normalized values were expressed as fold changes relative to the vehicle-control or doxorubicin-alone group, depending on the comparison. Western blot analyses were performed using three independent biological replicates. Uncropped Western blot images were deposited in the public data repository or uploaded as supplementary files.
9. SC79 rescue experiment
To examine whether protein kinase B signaling was associated with the observed effects of FTY720, HL60/A and K562/A cells were treated with FTY720 in the presence or absence of SC79, a protein kinase B activator. Cells were pretreated with 5 µM FTY720 for 12 h and then treated with 30 µM SC79 or vehicle control for an additional 12 h.
After treatment, phosphorylated protein kinase B, phosphorylated mechanistic target of rapamycin, P-glycoprotein, and multidrug resistance-associated protein 1 levels were assessed by Western blotting. In parallel, apoptosis was assessed by Annexin V and propidium iodide staining after doxorubicin, FTY720, and SC79 treatment. Rescue effects were interpreted as pathway-associated evidence. Because no genetic overexpression or knockdown experiment was performed, causal conclusions were stated cautiously.
10. Statistical analysis and data reporting
Statistical analyses were performed using GraphPad Prism, version 9.5, and IBM SPSS Statistics, version 23.0. Biological replicates were defined as independent experiments performed on different days using independently cultured cells. Technical replicates were defined as repeated wells or repeated measurements within the same biological experiment.
Data were presented as mean ± standard error of the mean unless otherwise specified. Two-group comparisons were analyzed using an unpaired two-tailed Student’s t-test when the data were approximately normally distributed. Comparisons among three or more groups were analyzed using one-way analysis of variance followed by Tukey’s post hoc test. Experiments involving two independent factors, such as drug concentration and treatment condition, were analyzed using two-way analysis of variance followed by an appropriate multiple-comparison correction.
When normality assumptions were not supported, nonparametric tests were used. Exact p-values were reported whenever possible. Statistical significance was defined as p < 0.05 after correction for multiple comparisons. All figure legends specified the number of biological replicates, the statistical test used, the meaning of error bars, and the significance threshold. Individual biological replicate values were shown in scatter plots or overlaid on bar graphs whenever possible.