Collection-image

TOPICAL COLLECTIONS

Measurement, Synthesis, And Functional Assay Of Oxidized RNA

Submit Abstract

Guest Editor

Mikiei Tanaka

Mikiei Tanaka

NIH/NHLBI

Dr. Mikiei Tanaka is a biochemist with a substantial background in molecular biology within a broad range of fields, particularly in neurodegenerative diseases. His studies in RNA oxidation began in 2003 when he was a research fellow at Dr. Earl Stadtman’s laboratory at the NIH/NHLBI. His study revealed that iron catalyzed oxidation of RNA causes translation error in cultured cells. Premature termination or possible amino acid misincorporation during protein synthesis generates abnormal polypeptides, which in turn deteriorate protein homeostasis. He continued his studies while at the The University of Oklahoma Health Sciences Center to expand understanding of the biological function of RNA oxidation, finding not  only the detrimental consequences but also the modulatory role of apoptosis. In addition, he and his colleagues developed a novel RNA oxidation assay based on the abasic site. Currently he is working at the NIH/NHLBI to further excavate the biological functions of RNA oxidation.

Collection Overview

Since elevated levels of oxidized RNA was originally reported in vulnerable neurons in Alzheimer disease in 1999, several diseases and pathological conditions have been found to be associated with RNA oxidation. RNA oxidation research has been directed towards understanding the potential mechanisms mediated by oxidized RNA. To date, oxidation of RNA has been assessed mainly based on the formation of 8-oxo-7,8-dihydroguanosine. In addition, generation of a variety of oxidative derivatives was expected since ROS do not attack specifically; for instance, 8-oxo-7,8-dihydroadenosine, 5-guanidinohydantoin, 4-pyrimidinone ribofuranoside, and the abasic site have been identified using several different methods. Furthermore, techniques to synthesize these oxidative derivatives and incorporate them into RNA molecules at specific sites has recently been developed and are now available in general laboratory settings. From a pathogenic point of view, the effects of RNA oxidation on translational activity have been investigated, from the biochemical to the cellular level through various assays. Not limited to protein synthesis, any RNA-mediated assay can reveal the biological effects of RNA oxidation. This topic aims to collect the current methods and technologies associated with RNA oxidation study from measurement and synthesis to functional assays.

Articles

Identification of RNA Fragments Resulting from Enzymatic Degradation using MALDI-TOF Mass Spectrometry
9:20

Identification of RNA Fragments Resulting from Enzymatic Degradation using MALDI-TOF Mass Spectrometry

0 Views

•

Cited by 5

•

2022

•