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Methods for Dissecting the DNA Damage Response Pathway
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Luke Yates

Luke Yates

Imperial College London, Section of Synthetic and Structural Biology

Luke Yates completed his degree in Pharmacology at the University of Southampton, UK, before earning his PhD from the Division of Structural Biology, University of Oxford, UK. There, Luke worked in the lab of Prof. Robert Gilbert determining the structure of a cytoplasmic Terminal Uridylyl Transferase – an important enzyme in a novel RNA metabolism pathway involved in cell cycle regulation. Continuing an interest in both structural biology and cell cycle regulation, Luke moved to Imperial College London where he joined the laboratory of Prof. Xiaodong Zhang in the Section of Synthetic and Structural Biology. His main research focus in the Zhang lab is the study of the DNA damage response, particularly the checkpoint regulatory kinases Mec1/ATR and Tel1/ATM, using structural biology approaches.

Collection Overview

Genomic stability is critical for life. Repair of DNA when damaged is vital for preserving the information stored in the genome, and failure to accurately repair DNA damage can drive tumorigenesis in humans through an accumulation of mutations. Life has evolved sophisticated surveillance, repair pathways, and mechanisms to identify and restore damage back to its original state, thus preserving the genome. Many of these pathways involve cascades of proteins that recognize damage type, e.g. a double-strand (ds) DNA break, amplify the signal around the damage site, and recruit other factors to accumulate and repair the damage. Many of these factors are tumour suppressors and are therefore targets in past and present cancer therapy discovery.

The investigation of the DNA Damage Response by structural, biophysical, and biochemical approaches in multiple organisms, has allowed the field to appreciate the roles and functions of components critical for DNA repair in great detail. This methods collection aims to show some of the approaches being deployed in the dissection of the DNA Damage Response – with a particular interest in the factors central to DNA repair.

Articles

Demonstration of the DNA Fiber Assay for Investigating DNA Damage and Repair Dynamics Induced by Nanoparticles
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Demonstration of the DNA Fiber Assay for Investigating DNA Damage and Repair Dynamics Induced by Nanoparticles

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2023

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Abstracts

Dissecting the repair mechanisms and DNA damage response machinery in mouse oocytes

Petros Marangos*1,

Marios Martzukos2,

Marios Ipeirotis3,

Chrysoula Zorzompokou*3

1Associate Professor, Head of the Dept of Biological Applications & Technology, University of Ioannina, Greece,

2Biological Applications & Technology, University of Ioannina, Greece,

3Dept of Biological Applications & Technology, University of Ioannina, Greece

An Integrated Experimental and Computational Framework for Quantifying Space Radiation-Induced DNA Damage and Repair in Saccharomyces cerevisiae

Charles Baker*1,

Steven Simske*1

1Colorado State University