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TOPICAL COLLECTIONS

Analysis of Cancer-associated Fibroblasts: Methods for Sample Preparation, Primary Cultivation, and In Vitro Assays

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Guest Editor

David Joel Agorku

David Joel Agorku

Miltenyi Biotec B.V. & Co. KG

David joined Miltenyi Biotec’s Cancer Research and Development department in 2010, focusing on product development for cancer cell isolation and analysis. Next to his job in R&D, he studied Molecular Biology at the University of Mainz and Molecular Life Sciences at the University of Applied Sciences in Nijmegen, receiving the M.Sc. degree in Molecular Life Sciences in 2019. Since 2015, David is a team leader in the R&D department of Miltenyi Biotec, focusing on 2D and 3D cultivation and isolation of cancer and cancer-associated cells.

Collection Overview

Development of solid tumors, tumor progression, and spread depend on the complex interplay of tumor cells and cells of the tumor microenvironment. Intercellular signals such as cell-cell or cell-matrix contacts, growth factors, chemokines and cytokines stir and orchestrate tumor cell fate and the course of the disease. Within the tumor microenvironment fibroblasts represent a highly active cellular as well as heterogeneous cell population. These cancer-associated fibroblasts (CAFs) have been shown to play a central role, since they secrete an array of factors that affect tumor and tumor-associated cells. Although CAFs have mainly been regarded as tumor-promoting cells, several groups have shown that fibroblasts are not only phenotypically heterogeneous in different tumor types, but are also functionally distinct within one tumor entity or even within the same patient. In pancreatic ductal adenocarcinoma for example, a tumor-restraining CAF subpopulation has been described.

In order to broaden our understanding of the fibroblast heterogeneity and how fibroblasts can affect tumor growth and progression, in vitro assays represent valuable tools to further study these cells in detail. Thus, the aim of this collection is to provide examples of how to isolate fibroblasts from primary tissues, share optimized protocols for primary cultivation and introduce protocols for downstream assays such as co-cultivation, immunofluorescence or analysis of secreted factors.

Articles

Cancer-Associated Fibroblasts from Mouse Mammary Tumors as Tools for Molecular and Computational Studies
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Cancer-Associated Fibroblasts from Mouse Mammary Tumors as Tools for Molecular and Computational Studies

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2025

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Abstracts

Isolation, flow cytometric analysis, and sorting of cancer associated fibroblasts from orthotopic mouse pancreatic tumors

Heena Kumra1,

Benjamin Wolf1,

Rakesh Jain*1

1Edwin L. Steele Laboratories, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, 100 Blossom Street, Cox-7, Boston, MA 02114, USA

Real-time Visualization of Cancer-associated Fibroblast Behavior in Mammary Tumor Organoid Co-cultures

Veronika Danek1,

Zuzana Sumbalova Koledova*1

1Institute of Molecular Genetics of the Czech Academy of Sciences