The difference comes from where their electrons enter the respiratory chain. FADH2 transfers electrons to ubiquinone through Complex II, so it bypasses Complex I. Because its electrons enter downstream, they contribute less to proton-gradient formation and consequently drive less ATP synthesis during oxidative phosphorylation. This distinction explains why electron carriers do not produce identical ATP yields.
Succinate dehydrogenase couples the oxidation of succinate to the reduction of FAD. As succinate becomes fumarate, FAD accepts two electrons and two hydrogen ions, forming FADH2. The enzyme therefore links a citric acid cycle reaction with electron delivery to the respiratory chain, allowing reducing power from nutrient oxidation to enter aerobic respiration through Complex II.
Ubiquinone receives the electrons transferred from FADH2 through respiratory Complex II. This makes it a connection between the flavin-containing reaction and later stages of the mitochondrial electron transport chain. Because the electrons reach ubiquinone rather than entering through Complex I, their movement supports proton-gradient formation indirectly and produces a lower ATP yield than NADH oxidation.
FADH2 also participates in fatty-acid oxidation and related metabolic pathways, extending its role beyond the succinate-to-fumarate reaction. In these settings, it carries reducing power generated during nutrient oxidation toward the respiratory machinery. Including these pathways gives a broader biological view of how cells channel energy from different nutrient sources into aerobic respiration.
Its formation marks the capture of electrons and hydrogen ions released during oxidation reactions. Subsequent transfer through Complex II and ubiquinone connects that captured reducing power with respiratory-chain activity. Studying this sequence helps clarify how chemical energy in nutrients becomes a proton gradient and is ultimately converted into ATP during oxidative phosphorylation.
Electron transfer from FADH2 contributes indirectly to formation of the mitochondrial proton gradient. That gradient provides the driving force for ATP synthesis during oxidative phosphorylation. Since these electrons enter downstream of Complex I, the resulting contribution is smaller than that associated with NADH, making FADH2 an important factor when comparing energy yields from respiratory pathways.