Agar Block Angling

Agar block angling is a tissue-preparation technique that uses a shaped or tilted agar support to orient neural specimens for consistent handling, sectioning, or imaging. The agar block stabilizes the sample while its angle aligns the tissue with the desired anatomical plane, helping researchers obtain reproducible sections and expose specific regions of the nervous system. In neuroscience, this approach supports microscopy, histological analysis, and circuit-level studies by improving specimen positioning and reducing movement during processing. Careful control of the block’s geometry and orientation can enhance image quality, preserve anatomical relationships, and improve comparisons across experimental samples.

Agar Block Angling - Related Videos

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JoVE Journal - Biology

Agar-Block Microcosms for Controlled Plant Tissue Decomposition by Aerobic Fungi

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Cited by 6 •

2011

This video demonstrates a controlled environment approach to study degradation of lignocellulosic plant tissues by aerobic fungi. The ability to control nutrient sources and moisture is a key advantage of agar-block microcosms, but the approach often yields mixed success. We address critical pitfalls to yield reproducible, low-variability results.

Functionalization of Single-walled Carbon Nanotubes with Thermo-reversible Block Copolymers and Characterization by Small-angle Neutron Scattering

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Cited by 2 •

2016

A method for the functionalization of carbon nanotubes with structure-tunable polymeric encapsulation layers and structural characterization using small-angle neutron scattering is presented.

Assay for Adhesion and Agar Invasion in S. cerevisiae

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Cited by 17 •

2006

We describe a qualitative assay for yeast adhesion and agar invasion as a measure of invasive and pseudohyphal differentiation. This simple assay can be used to assess the invasive phenotype of various mutants as well as the effects environmental cues and signaling pathways on yeast differentiation.

Chemically-blocked Antibody Microarray for Multiplexed High-throughput Profiling of Specific Protein Glycosylation in Complex Samples

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Cited by 6 •

2012

In this study, we describe an improved protocol for a multiplexed high-throughput antibody microarray with lectin detection method that can be used in glycosylation profiling of specific proteins. This protocol features new reliable reagents and significantly reduces the time, cost, and lab equipment requirements as compared to the previous procedure.

Subculturing Sulfite-Reducing Anaerobic Bacteria from an Agar Culture

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2025

Source: Anwar, Z., et al. Enrichment and Detection of Clostridium perfringens Toxinotypes in Retail Food Samples. J. Vis. Exp. (2019).In this video, sulfite-reducing bacteria are cultured in a sulfite-containing agar medium, where they grow anaerobically and reduce sulfite to hydrogen sulfide, forming black precipitates with iron ions. Black colonies are isolated from the agar depth using aseptic techniques and transferred to fresh medium for continued anaerobic incubation.

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