Name: dna damage repair by excision
Uploaded: 2026-08-26T08:19:31.026Z
Duration: 1 min 46 s
Channel: JoVE

K12 Standards

new-jersey-student-learning-standards-for-science

New Jersey Student Learning Standards for Science

High School

Life Science

from-molecules-to-organisms-structures-and-processes

From Molecules to Organisms: Structures and Processes

HS-LS1-1

Nucleotide Excision Repair

- [Anlat&#x131;c&#x131;] DNA&#x27;n&#x131;n ultraviyole &#x131;&#x15F;&#x131;&#x11F;a ve baz&#x131; kimyasal kanserojenlere maruz kalmas&#x131; iri bir lezyonun olu&#x15F;mas&#x131;na sebep olabilir.
 Bu, DNA&#x27;n&#x131;n normal yap&#x131;s&#x131;n&#x131;n belli bir &#x15F;ekilde bozulmas&#x131;d&#x131;r.
 Bu t&#xFC;r bir hasar, n&#xFC;kleotid eksizyon onar&#x131;m&#x131; denen bir s&#xFC;re&#xE7;le d&#xFC;zeltilebilir.
S&#xFC;re&#xE7;, burada E. Coli ile g&#xF6;sterilen, UvrA ve UvrB proteinleri i&#xE7;eren bir enzim kompleksinin DNA boyunca ilerlemesi ve lezyonun fiziksel bozuklu&#x11F;unu tespit etmesiyle ba&#x15F;lar.
 Bu noktada zincirler ayr&#x131;l&#x131;r ve UvrC gibi endon&#xFC;kleaz enzimler hasar&#x131;n her iki taraf&#x131;ndan zinciri b&#xF6;ler.
 DNA helikaz enzimi, kesilmi&#x15F; par&#xE7;ay&#x131; yok eder.
DNA polimeraz adl&#x131; bir di&#x11F;er enzim bo&#x15F;lu&#x11F;u yeni n&#xFC;kleotidlerle doldurur.
 Son olarak DNA ligaz enzimi yeni ve eski DNA aras&#x131;ndaki k&#xF6;&#x15F;eleri m&#xFC;h&#xFC;rleyerek ve onar&#x131;m&#x131; tamamlar.

Schärer, Orlando D. "Ökaryotlarda nükleotid eksizyon onarımı." Biyolojide Cold Spring Harbor perspektifleri 5, no. 10 (2013): a012609. [<a href="https://dx.doi.org/10.1101%2Fcshperspect.a012609">Kaynak</a>]

nükleotid eksizyon onarımı

<h4>Genel Bak&#x131;&#x15F;</h4>

Mutajenlere maruz kalma, DNA&#x27;ya zarar verebilir ve &#xE7;ift sarmal yap&#x131;y&#x131; bozan veya uygun transkripsiyonu engelleyen b&#xFC;y&#xFC;k lezyonlara neden olabilir. Hasarl&#x131; DNA, n&#xFC;kleotid eksizyon onar&#x131;m&#x131; (NER) ad&#x131; verilen bir i&#x15F;lemle tespit edilebilir ve onar&#x131;labilir. NER, hasarl&#x131; bir b&#xF6;lgeyi tespit etmek i&#xE7;in &#xF6;nce DNA&#x27;y&#x131; tarayan bir dizi &#xF6;zel protein kullan&#x131;r. Daha sonra, NER proteinleri telleri ay&#x131;r&#x131;r ve hasarl&#x131; b&#xF6;lgeyi &#xE7;&#x131;kar&#x131;r. Son olarak, de&#x11F;i&#x15F;tirmeyi yeni, e&#x15F;le&#x15F;en n&#xFC;kleotidlerle koordine ederler. 

<h4>DNA bozulmas&#x131; ve Hasar&#x131;</h4>

H&#xFC;creler d&#xFC;zenli olarak &#xE7;evrede DNA&#x27;ya zarar verebilecek ve mutasyonlar olu&#x15F;turabilecek mutajen fakt&#xF6;rlere maruz kal&#x131;r. UV radyasyonu en yayg&#x131;n mutajenlerden biridir ve DNA&#x27;ya &#xF6;nemli say&#x131;da de&#x11F;i&#x15F;iklik getirdi&#x11F;i tahmin edilmektedir. Bunlar, DNA replikasyonunu veya transkripsiyonunu bloke edebilen yap&#x131;daki k&#x131;vr&#x131;mlar&#x131; veya b&#xFC;k&#xFC;lmeleri i&#xE7;erir. Bu hatalar d&#xFC;zeltilmezse, hasar mutasyonlara neden olabilir ve bu da hangi sekanslar&#x131;n bozuldu&#x11F;una ba&#x11F;l&#x131; olarak kansere veya hastal&#x131;&#x11F;a neden olabilir. 

<h4>Hasar G&#xF6;rm&#xFC;&#x15F; B&#xF6;lgelerin Belirlenmesi ve Onar&#x131;m&#x131;</h4>

N&#xFC;kleotid eksizyon onar&#x131;m&#x131;, hasarl&#x131; DNA b&#xF6;lgelerini tan&#x131;mak ve bunlar&#x131; &#xE7;&#x131;karma ve onar&#x131;m i&#xE7;in i&#x15F;aretlemek i&#xE7;in belirli protein komplekslerine dayan&#x131;r. Prokaryotlarda s&#xFC;re&#xE7;, &#xFC;&#xE7; protein i&#xE7;erir; UvrA, UvrB ve UvrC. &#x130;lk iki protein, herhangi bir fiziksel anormalli&#x11F;i tespit etmek i&#xE7;in DNA zincirleri boyunca hareket eden bir kompleks olarak birlikte &#xE7;al&#x131;&#x15F;&#x131;r. 

Tan&#x131;mland&#x131;ktan sonra, hasarl&#x131; konumdaki iplikler ayr&#x131;l&#x131;r ve UvrC gibi endon&#xFC;kleaz enzimleri etkilenen b&#xF6;lgeyi kesip &#xE7;&#x131;kar&#x131;r. DNA polimeraz bo&#x15F;lu&#x11F;u yeni n&#xFC;kleotidlerle doldurur ve ard&#x131;ndan DNA ligaz enzimi yeni ve eski DNA aras&#x131;ndaki u&#xE7;lar&#x131; kapat&#x131;r. 

<h4>NER&#x27;deki Mutasyonlar&#x131;n Ciddi Sonu&#xE7;lar&#x131; Vard&#x131;r</h4>

Prokaryotlarda NER kompleksi, &#xFC;&#xE7; Uvr proteininden olu&#x15F;ur, ancak &#xF6;karyotlarda, DNA onar&#x131;m&#x131;n&#x131; d&#xFC;zenlemek i&#xE7;in bir d&#xFC;zineden fazla protein &#xE7;al&#x131;&#x15F;&#x131;r. &#x130;nsanlarda, NER yola&#x11F;&#x131;ndaki mutasyonlar, cilt kanseri insidans&#x131;nda 2000 kat art&#x131;&#x15F;la ili&#x15F;kilendirilen xeroderma pigmentosum (XP) gibi hastal&#x131;klara neden olabilir. XP&#x27;den muzdarip ki&#x15F;iler UV maruziyetine kar&#x15F;&#x131; olduk&#xE7;a hassast&#x131;r ve g&#xFC;ne&#x15F; &#x131;&#x15F;&#x131;&#x11F;&#x131;na sadece birka&#xE7; dakika maruz kald&#x131;ktan sonra ciddi cilt yan&#x131;klar&#x131; geli&#x15F;tirebilirler. Ek olarak, XP hastalar&#x131; erken ya&#x15F;lanma belirtileri g&#xF6;sterebilir ve s&#x131;kl&#x131;kla n&#xF6;rolojik anormallikler geli&#x15F;tirebilir. D&#xFC;zg&#xFC;n &#xE7;al&#x131;&#x15F;an bir onar&#x131;m mekanizmas&#x131; olmadan, DNA hasar&#x131; birikebilir ve anormal h&#xFC;cre &#xF6;l&#xFC;m&#xFC;ne veya potansiyel olarak kanserli t&#xFC;m&#xF6;rlere yol a&#xE7;abilir.

Nükleotid Eksizyon Onarımı

Overview

Exposure to mutagens can damage DNA and result in bulky lesions that distort the double-helix structure or impede proper transcription. Damaged ...

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Education

JoVE Core

Biology

Biyoloji

Genetics

Genetik

DNA Structure and Function

DNA Yapısı ve İşlevi

KEY TERMS AND CONCEPTS

TEMEL TERİMLER VE KAVRAMLAR

dna damage repair by excision

DNA damage repair by excision protects cells from mutagens that can change DNA. Exposure to environmental mutagens can create bulky lesions that bend the double helix or block transcription. If these changes are not repaired, they can lead to mutations and may contribute to cancer or disease, depending on which DNA sequences are affected.

Nucleotide excision repair, or NER, is the process that detects and removes this kind of damage. Specialized proteins scan the DNA for a damaged region, then separate the strands around it. The damaged section is cut out, and a matching stretch of new nucleotides is added in its place.

UV radiation is one of the most common mutagens and can introduce many DNA changes. These changes can cause kinks in the DNA structure and interfere with replication or transcription. Because of this, cells rely on repair systems to keep damaged DNA from building up.

In prokaryotes, NER uses three main proteins: UvrA, UvrB, and UvrC. UvrA and UvrB work together as a complex and move along the DNA to spot physical damage. After the damaged site is found, the strands are separated, UvrC cuts out the affected section, DNA polymerase fills the gap, and DNA ligase seals the remaining break.

NER is more complex in eukaryotes, where more than a dozen proteins help control DNA repair. In humans, mutations in the NER pathway can cause xeroderma pigmentosum, or XP. This disorder is linked to a 2000-fold increase in skin cancer risk, strong sensitivity to UV light, severe burns after only a few minutes in sunlight, premature aging, and neurological problems. Without a working repair system, DNA damage can accumulate and lead to abnormal cell death or cancerous tumors.

DNA Damage Repair by Excision

the dna helix

How DNA Stores Genetic Information

DNA stores genetic information that is passed from one generation to the next in organisms and most viruses. It is built from two strands of nucleotides that twist together into a double helix. The story of how scientists uncovered this structure developed step by step over nearly a century. Each DNA strand is made of nucleotides. A nucleotide contains the sugar deoxyribose, a phosphate group, and one of four nitrogen bases: adenine (A), guanine (G), cytosine (C), or thymine (T). Adenine and...

dna packaging

Chromatin and Histones in DNA Packing

Eukaryotic cells must pack long DNA molecules into the nucleus, and chromatin makes that possible. DNA wraps around proteins called histones to form nucleosomes, which are the main unit of DNA packaging. Nucleosomes then coil into compact chromatin fibers. The amount of DNA in a cell is much larger than it first seems. A single human skin cell has about 3 billion base pairs of DNA, and if that DNA were stretched out in a line, it would be about 2 meters long. With about 50 trillion cells in...

organization of genes

Genes, Introns, and Regulatory DNA

Eukaryotic genes are arranged within DNA along with non-coding regions that help control gene activity. A DNA strand includes genes and intergenic regions, which are the stretches between genes. These regions do not code for proteins, but they can contain important regulatory elements such as promoters, enhancers, and silencers. A gene itself is not a single continuous coding block. It usually contains protein-coding exons and non-coding introns. After DNA is transcribed into pre-mRNA in the...

karyotyping

Chromosome Stains for Detecting Disorders

Chromosome staining helps scientists find genetic disorders by showing the number and physical features of chromosomes. These features appear after DNA condenses into chromosomes during mitosis. Cytogeneticists then stop mitosis and stain the chromosomes to study their banding pattern. The pattern reveals details such as chromosome number, shape, and type. A chromosome description like this is called a karyotype. To create one, scientists take an image of the stained chromosomes and identify...

replication in prokaryotes

How Prokaryotic DNA Is Copied

Prokaryotic DNA is copied through a coordinated process with three main stages: initiation, elongation, and termination. It begins when initiator proteins bind to the single origin of replication, or ori, on the cell’s circular chromosome. The DNA then copies around the circle in both directions, starting from two replication forks, and this produces two DNA molecules. Several proteins work together to open and protect the DNA during replication. Topoisomerase cuts one side of the...

replication in eukaryotes

Eukaryotic DNA Copying and Telomeres

Eukaryotic DNA copying is tightly regulated and must duplicate many linear chromosomes before cell division. The process is highly conserved and uses many proteins with specialized roles. It moves through initiation, elongation, and termination, and it ends with two complete sets of chromosomes in the nucleus. Eukaryotic replication shares basic steps with prokaryotic DNA replication, but the larger genome and linear chromosomes require more proteins. Replication begins at multiple origins of...

proofreading

DNA Polymerase Fixes Replication Errors

DNA polymerase helps copy DNA and fix mistakes during replication. It adds nucleotides in a sequence that matches the template DNA strand. The enzyme also has a higher affinity for the correct base, which helps keep DNA replication accurate. As new genomic DNA is made, it is synthesized in the 5’ to 3’ direction. In many cells, DNA polymerases have different jobs in this process. DNA polymerase delta and DNA polymerase epsilon can proofread when nuclear DNA is being copied. These polymerases...

mismatch repair

DNA Mismatch Repair in Replication

DNA mismatch repair fixes copying errors that happen during DNA replication. When DNA polymerase makes a mistake, the cell can detect a wrong base pair, such as A with G or T with C, and replace it with the correct nucleotide. This repair system works in both prokaryotes and eukaryotes and depends on several proteins. The Mutator protein family plays a central role in this process. In bacteria such as Escherichia coli, MutS first binds the mismatch. MutL then helps identify which strand is the...

nucleotide excision repair

DNA damage repair by excision protects cells from mutagens that can change DNA. Exposure to environmental mutagens can create bulky lesions that bend the double helix or block transcription. If these changes are not repaired, they can lead to mutations and may contribute to cancer or disease, depending on which DNA sequences are affected. Nucleotide excision repair, or NER, is the process that detects and removes this kind of damage. Specialized proteins scan the DNA for a damaged region, then...

mutations

DNA Changes From Point Mutations to UV Damage

Mutations are changes in the DNA sequence. They can happen by chance during DNA copying, or they can be caused by environmental factors such as radiation and chemicals. Scientists also describe mutations by how much DNA they affect, how they change a protein, and whether they happen in body cells or germline cells. Some mutations affect only one nucleotide, which is a point mutation. When a point mutation falls inside a gene, the outcome depends on how the amino acid sequence changes. A silent...

transcription

Transcription and Gene Control

Transcription and gene control explain how cells make RNA from DNA and decide which genes are active. RNA polymerase copies a DNA sequence into RNA, and this is the first step in making a protein from a gene. Many other proteins and control sequences help make messenger RNA, or mRNA, correctly. In eukaryotes, the DNA is first copied into a primary RNA, also called pre-mRNA. This RNA can then be processed into mature mRNA, which serves as the template for protein synthesis. In prokaryotes such...

translation

Protein Synthesis and mRNA Decoding

Protein synthesis begins when ribosomes decode messenger RNA (mRNA) and build a chain of amino acids. This final step of gene expression is called translation. The finished chain is a polypeptide, which can later become a functional protein. Proteins are often called the building blocks of life because they make up much of the body, from muscle fibers to hairs and immune system parts. The instructions for each protein are encoded in genes found in the DNA of every cell. In biology, the central...

bacterial transformation

Griffith’s Mouse Experiment and DNA

Bacterial transformation explains how DNA can move into bacteria and change their traits. Frederick Griffith first noticed this in 1928 while studying pneumonia-causing Streptococcus pneumoniae in mice. He compared one pathogenic strain with one non-pathogenic strain and found that only the pathogenic strain killed the host mice. Griffith made an unexpected discovery when he killed the pathogenic bacteria and mixed their remains with live, non-pathogenic bacteria. The mixture killed the mice,...

key terms and concepts

Learn how nucleotide excision repair fixes UV-induced DNA damage by cutting out lesions and replacing them with new DNA. Includes prokaryotes, humans, and XP.

DNA Damage Repair by Excision | JoVE K12

JoVE Core series brings biology to life through over 300 concise and easy-to-understand animated video lessons that explain key concepts in biology, plus more than 150 scientist-in-action videos that show actual research experiments conducted in today’s laboratories.

biology

JoVE Core serisi, biyolojinin ana konseptlerini açıklayan 300 adet kısa ve kolay anlaşılabilir olan video dersleriyle ve günümüz laboratuvarlarında yürütülen gerçek araştırmaları gösteren 150'den fazla \"bilim insanları iş başında\" videolarıyla biyolojiye hayat vermektedir.

Next Generation Science Standards

heredity-inheritance-and-variation-of-traits

Heredity: Inheritance and Variation of Traits

HS-LS3-2

new-york-state-science-learning-standards

New York State Science Learning Standards

Inheritance and Variation of Traits

HS-LS3-1.

The DNA Helix

Overview

Deoxyribonucleic acid, or DNA, is the genetic material responsible for passing traits from generation to generation in all organisms and most ...

DNA Packaging

Overview

Eukaryotes have large genomes compared to prokaryotes. In order to fit their genomes into a cell, eukaryotes must pack their DNA tightly inside ...

Organization of Genes

Overview

The genomes of eukaryotes can be structured in several functional categories. A strand of DNA is comprised of genes and intergenic regions. ...

Karyotyping

Describing the number and physical features of chromosomes can reveal abnormalities that underlie genetic diseases. This description is facilitated by ...

Replication in Prokaryotes

Overview

DNA replication has three main steps: initiation, elongation, and termination. Replication in prokaryotes begins when initiator proteins bind to ...

Replication in Eukaryotes

Overview

In eukaryotic cells, DNA replication is highly conserved and tightly regulated. Multiple linear chromosomes must be duplicated with high ...

Proofreading

Synthesis of new DNA molecules starts when DNA polymerase links nucleotides together in a sequence that is complementary to the template DNA strand. DNA ...

Mismatch Repair

Overview

Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires ...

Mutations

Overview

Mutations are changes in the sequence of DNA. These changes can occur spontaneously or they can be induced by exposure to environmental factors. ...

Transcription

Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene ...

Translation

Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following ...

Bacterial Transformation

In 1928, bacteriologist Frederick Griffith worked on a vaccine for pneumonia, which is caused by Streptococcus pneumoniae bacteria. Griffith studied two ...

Construct an explanation based on evidence for how the structure of DNA determines the structure of proteins which carry out the essential functions of life through systems of specialized cells.

Assessment Boundary: Assessment does not include identification of specific cell or tissue types, whole body systems, specific protein structures and functions, or the biochemistry of protein synthesis.

Characteristics of Life

Biology is a natural science that studies life and living organisms, including their structure, function, development, interactions, evolution, ...

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Levels of Organization

Biological organization is the classification of biological structures, ranging from atoms at the bottom of the hierarchy to the Earth&#x27;s biosphere. ...

Overview of Anatomy and Physiology

Human anatomy is the scientific study of the body&#39;s structures. Some of these structures are very small and can only be observed and analyzed with the ...

structural-organization-of-the-human-body-an-overview

Structural Organization of the Human Body: An Overview

It is convenient to consider the body&#39;s structures in terms of fundamental levels of organization that increase in complexity: subatomic particles, ...

Functions of Life

Human life is characterized by a variety of functions that are essential for survival and well-being. These functions include metabolism, movement, ...

Develop and use a model to illustrate the hierarchical organization of interacting systems that provide specific functions within multicellular organisms.

Clarification statement: Emphasis is on functions at the organism system level such as nutrient uptake, water delivery, and organism movement in response to neural stimuli. An example of an interacting system could be an artery depending on the proper function of elastic tissue and smooth muscle to regulate and deliver the proper amount of blood within the circulatory system.

Assessment Boundary: Assessment does not include interactions and functions at the molecular or chemical reaction level.

HS-LS1-2

Requirements for Human Life

The Earth and its atmosphere have provided humans with air, water, and food, but these are not the only requirements for survival. Humans also require a ...

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Negative and Positive Feedback

Homeostatic Imbalance

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Plan and conduct an investigation to provide evidence that feedback mechanisms maintain homeostasis.

Clarification statement: Examples of investigations could include heart rate response to exercise, stomate response to moisture and temperature, and root development in response to water levels.

Assessment Boundary: Assessment does not include the cellular processes involved in the feedback mechanism.

HS-LS1-3

What is the Cell Cycle?

The cell cycle refers to the sequence of events occurring throughout a typical cell&#8217;s life. In eukaryotic cells, the somatic cell cycle has two ...

Interphase

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The Cell Cycle Control System

Positive Regulator Molecules

Inhibition of CDK Activity

Mitogens and the Cell Cycle

Mitosis and Cytokinesis

In eukaryotes, the cell division cycle is divided into distinct, coordinated cellular processes that include cell growth, DNA replication/chromosome ...

Chromosome Duplication

Cohesins

Condensins

The Mitotic Spindle

Centrosome Duplication

Spindle Assembly

Attachment of Sister Chromatids

Forces Acting on Chromosomes

Separation of Sister Chromatids

Live Cell Imaging of Mitosis

Mitosis is a form of cell division in which a cell&#8217;s genetic material is divided equally between two daughter cells. Mitosis can be broken down into ...

The Spindle Assembly Checkpoint

Cell Division

Cell division is fundamental to all living organisms and required for growth and development. As an essential means of reproduction for all living things, ...

Anaphase A and B

Anaphase Promoting Complex

The Contractile Ring

Determining the Plane of Cell Division

The Phragmoplast

Distribution of Cytoplasmic Content

An Introduction to Cell Division

Cell division is the process by which a parent cell divides and gives rise to two or more daughter cells. It is a means of reproduction for single-cell ...

Cell Cycle Analysis

Cell cycle refers to the set of events through which a cell grows, replicates its genome, and ultimately divides into two daughter cells through the ...

Use a model to illustrate the role of cellular division (mitosis) and differentiation in producing and maintaining complex organisms.

Assessment Boundary: Assessment does not include specific gene control mechanisms or rote memorization of the steps of mitosis.

HS-LS1-4

Photosynthesis

Autotrophs

Almost all living organisms on Earth depend on photosynthesis, which is the process that converts sunlight energy into a simple sugar called ...

What is Photosynthesis?

All living organisms on Earth are directly or indirectly dependent on photosynthesis. It is the only biological process that can capture energy from ...

The Anatomy of Chloroplasts

Green algae and plants, including green stems and unripe fruit, harbor specialized organelles called chloroplasts to carry out photosynthesis. They ...

Photosystems

Photosystems are multiprotein complexes that form the functional units of photosynthesis in plants, algae, and cyanobacteria. They are found embedded in ...

The Photochemical Reaction Center

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The Antenna Complex

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the-z-scheme-of-electron-transport-in-photosynthesis

The Z-Scheme of Electron Transport in Photosynthesis

The light reactions of photosynthesis assume a linear flow of electrons from water to NADP+. During this process, light energy drives the splitting of ...

The Calvin Benson Cycle

Ribulose 1,5- bisphosphate carboxylase/oxygenase (RuBisCo) is a critical enzyme that catalyzes carbon dioxide assimilation during photosynthesis. However, ...

Use a model to illustrate how photosynthesis transforms light energy into stored chemical energy.

Clarification statement: Emphasis is on illustrating inputs and outputs of matter and the transfer and transformation of energy in photosynthesis by plants and other photosynthesizing organisms. Examples of models could include diagrams, chemical equations, and conceptual models.

Assessment Boundary: Assessment does not include specific biochemical steps.

HS-LS1-5

Compounds Essential to Human Function

The human body is composed of cells that are fundamentally made up of several different molecules. These molecules are essential to carry out all ...

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Carbohydrate Metabolism

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lipid-derived-compounds-in-the-human-body

Lipid-derived Compounds in the Human Body

Fats and lipids are crucial components in the human body. Some lipid-derived compounds, such as fat-soluble vitamins, eicosanoids, lipoproteins, and ...

Fats as Energy Storage Molecules

What are Proteins?

Protein Organization

Globular Proteins

In organisms, proteins are the most abundant macromolecules. They act as the building blocks of life and play various crucial roles in the body. Proteins ...

Construct and revise an explanation based on evidence for how carbon, hydrogen, and oxygen from sugar molecules may combine with other elements to form amino acids and/or other large carbon- based molecules.

Clarification statement: Emphasis is on using evidence from models and simulations to support explanations.

Assessment Boundary: Assessment does not include the details of the specific chemical reactions or identification of macromolecules.

HS-LS1-6

DNA Damage Repair by Excision

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