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December 28, 2015
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This protocol describes an approach to interrogate the recombined immunoglobulin heavy chain VDJ regions of lymphomas by deep-sequencing and retrieve VDJ rearrangement and somatic hypermutation status to delineate clonal architecture of individual tumor. Comparing clonal architecture between paired diagnosis and relapse samples reveals lymphoma relapse clonal evolution modes.
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Cite this Article
Jiang, Y., Nie, K., Redmond, D., Melnick, A. M., Tam, W., Elemento, O. VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma. J. Vis. Exp. (106), e53215, doi:10.3791/53215 (2015).
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