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Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group
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JoVE Journal Behavior
Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group

Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group

DOI:
10.3791/56107-v

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07:49 min

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August 16, 2017

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1Department of Microbiology and Immunology, Arizona College of Osteopathic Medicine,Midwestern University

Chapters

  • 00:05Title
  • 00:37Generating Protein Reference Based On Important Features
  • 03:40Refining Amino Acid Alignments
  • 05:50Results: Comparison of Analyses
  • 06:56Conclusion

Summary

Automatic Translation

Automatic Translation

The goal of this protocol is to develop a reference for divergent proteins in a group that lacks coherent criteria for nomenclature and classification. This reference will facilitate analyses and discussion of the group as a whole and can be used in addition to established names.

Tags

Keywords: Protein ReferenceProtein ClassificationProtein NomenclatureCysteine-stabilized Alpha-beta SuperfamilyCS Alpha-beta FoldCysteine-stabilized HelixSpreadsheetSequence AlignmentConserved FeaturesStructural DatabasesProtein SubgroupsSequence Variation

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