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Pattern-based Search of Epigenomic Data Using GeNemo

JoVE Journal
Bioengineering
Author Produced

This content is Free Access.

JoVE Journal Bioengineering

Pattern-based Search of Epigenomic Data Using GeNemo

Pattern-based Search of Epigenomic Data Using GeNemo

DOI:

10.3791/56136-v

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06:38 min

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October 08, 2017

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Alvin Zheng*¹, Xiaoyi Cao*¹, Sheng Zhong

¹Department of Bioengineering,University of California San Diego

Chapters

00:00Title
01:24Using GeNemo
04:05Results
04:56Conclusion

Summary

Automatic Translation

Unlike DNA sequence data, epigenomic data are not readily subjected to text-based searches. Presented here are the procedures to use an upgraded version of GeNemo, a web-based bioinformatics tool, to conduct pattern-based searches for similarities in epigenomic data comparing available online databases including Encyclopedia of DNA Elements with user's data.

Tags

Keywords: – GeNemo – Epigenomic Data – Pattern-based Search – DNA-binding Protein – Epigenetic Modifications – Cell Types – ENCODE – Mousington – BED Format – Bigwig Format – Search Range – Chromosome – Base Pair

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