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Journal / Bioengineering / Pattern-based Search of Epigenomic Data Using…
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Bioengineering
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JoVE Journal Bioengineering
Pattern-based Search of Epigenomic Data Using GeNemo
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Pattern-based Search of Epigenomic Data Using GeNemo

Article DOI: 10.3791/56136-v • 06:38 min • October 8th, 2017
October 8th, 2017 •
*1, *1, 1
1Department of Bioengineering, University of California San Diego
* These authors contributed equally

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Summary
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Unlike DNA sequence data, epigenomic data are not readily subjected to text-based searches. Presented here are the procedures to use an upgraded version of GeNemo, a web-based bioinformatics tool, to conduct pattern-based searches for similarities in epigenomic data comparing available online databases including Encyclopedia of DNA Elements with user's data.

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Pattern-based Search Epigenomic Data GeNemo Researchers Epigenetic Study Regions Of Similarity Epigenetic Marks Cell Types Public Databases Encode Mousington Informational Search Keywords K4 Primization Novel DNA-fighting Protein Epigenetic Modifications Cell Counts Pattern-matching Methods Similarity Score Data Exporting Options Data File BED Format Big Wig Format
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