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Methylated RNA Immunoprecipitation Assay to Study m5C Modification in Arabidopsis
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Genetics
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JoVE Journal Genetics
Methylated RNA Immunoprecipitation Assay to Study m5C Modification in Arabidopsis

Methylated RNA Immunoprecipitation Assay to Study m5C Modification in Arabidopsis

DOI:
10.3791/61231-v

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08:50 min

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May 14, 2020

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, , ,
1Max Planck Institute of Molecular Plant Physiology, 2Department of Molecular Medicine, Medical School,University of Padua, 3Biologie de l’Ecole Normale Supérieure (IBENS), Paris, France

Chapters

  • 00:04Introduction
  • 00:32RNA Preparation
  • 03:44Methylated RNA Immunoprecipitation (MeRIP)
  • 07:02Results: Representative MeRIP Analyses
  • 08:23Conclusion

Summary

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The methylated RNA immunoprecipitation assay is an antibody-based method used to enrich for methylated RNA fragments. Coupled with deep sequencing, it leads to the identification of transcripts carrying the m5C modification.

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Keywords: Methylated RNA ImmunoprecipitationMeRIPRNA ModificationTranscriptomeArabidopsisRNA ExtractionGuanidine ThiocyanateAcid Phenol1-bromo-3-chloropropaneIsopropanolSodium AcetateEthanolDNaseRNA Integrity NumberIn Vitro TranscriptSonication

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