This article describes a study evaluating the prognosis of CYP2C19 genotype-guided butylphthalide therapy in acute cerebral infarction, showing that poor metabolizers have worse outcomes, and that Hcy, NIHSS, and CYP2C19 are independent predictors.
Method Article
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| 2× TaqMan Master Mix | Thermo Fisher Scientific | 4371355 | Used for CYP2C19 genotyping real-time PCR reaction |
| Agarose | N/A | N/A | Used to prepare 2% gel for agarose gel electrophoresis |
| Butylphthalide capsules | NBP Pharmaceutical Co., Ltd. | H20050299 | 0.1 g per capsule; administered at 0.2 g three times daily on an empty stomach |
| DNA extraction kit | Tiangen Biotech | DP304 | Used for genomic DNA extraction from serum samples; includes lysis buffer, wash buffer and elution buffer |
| Electronic case report forms (e-CRF) | N/A | N/A | Systematic clinical data collection tool covering five clinical data domains |
| ELISA kit for homocysteine (Hcy) | Shanghai Enzyme-linked Biotech | N/A | Detection range 5–50 μmol/L; coefficient of variation <5%; for serum Hcy measurement |
| Elution buffer | Tiangen Biotech | N/A | Pre-warmed to 70°C; component of DP304 DNA extraction kit, for DNA elution |
| Eppendorf 5425R Refrigerated High-Speed Centrifuge | Eppendorf | 5425R | Used for serum isolation and genomic DNA purification centrifugation steps |
| Hi-SNP sequencing platform/analysis system | BGI Genomics | N/A | Second-generation sequencing; used for CYP2C19 genotype confirmation with 100× coverage |
| HpyCH4V restriction enzyme | New England Biolabs | N/A | Used for restriction fragment length polymorphism analysis of discordant genotyping results |
| Lysis buffer | Tiangen Biotech | N/A | Component of DP304 DNA extraction kit; incubated with samples at 56°C for 10 min |
| NanoDrop spectrophotometer | Thermo Fisher Scientific | N/A | Used to adjust final genomic DNA concentration to 50-100 ng/μL |
| Nuclease-free water | N/A | N/A | Used to prepare CYP2C19 genotyping real-time PCR reaction mixture |
| Primer-probe mix (CYP2C19*2) | Thermo Fisher Scientific | C__25986767_30 | Specific for CYP2C19*2 genotyping in real-time PCR |
| Primer-probe mix (CYP2C19*3) | Thermo Fisher Scientific | C__27861809_10 | Specific for CYP2C19*3 genotyping in real-time PCR |
| Roche LightCycler 480 II system | Roche Diagnostics | LightCycler 480 II | Real-time PCR system for CYP2C19 genotyping |
| Roche/Hitachi 7600 analyzer | Roche Diagnostics/Hitachi | 7600 | For lipid profile (TC, TG, LDL-C, HDL-C) measurement; assay ranges for lipids specified in the study |
| SPSS | IBM Corp. | 25 | Statistical analysis software; used for all study data analysis (χ² tests, t-tests, logistic regression, etc.) |
| Wash buffer | Tiangen Biotech | N/A | Component of DP304 DNA extraction kit; two wash steps with 500 μL each in DNA purification |
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