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The TMEM120 M207A mutant was expressed in HEK293SF-17 suspension cells using a pCDNA3.1 vector encoding an N-terminal FLAG tag Figure 1. Transient transfection enabled recombinant protein expression. After cell harvest, membrane proteins were solubilized in 0.5% lauryl maltose neopentyl glycol (LMNG), a non-ionic detergent suitable for maintaining membrane protein solubility.
The solubilized fraction was subjected to affinity purification using anti-FLAG M2 resin. The resin was washed with buffer containing 0.01% LMNG to remove non-specifically bound proteins, and TMEM120 M207A was eluted in buffer containing 0.001% LMNG. The elution was concentrated using centrifugal filters with molecular weight cutoffs of either 30 kDa or 100 kDa, depending on sample yield. Further purification was performed by size-exclusion chromatography (SEC). The final SEC step was carried out in a buffer containing 0.00015% LMNG, producing a monodisperse elution profile consistent with a homogeneous and stable protein preparation suitable for subsequent structural and functional analyses (Figure 2B).
Optimization and biophysical characterization of FLAG-tagged TMEM120 M207A are summarized in Figure 2. Expression and purification were confirmed by SDS-PAGE, which showed a single band at approximately 50 kDa. The observed migration was slightly above the expected molecular weight of the monomeric form (Figure 2A), likely due to the nonboiled sample prior to electrophoresis. The SEC chromatogram displayed a single, symmetric peak eluting at a volume corresponding to an apparent molecular mass of approximately 150 kDa in 0.00015% (w/v) LMNG (Figure 2B), consistent with the TMEM120A M207A dimer in LMNG detergent micelles. This elution behavior exhibits a homogeneous and monodisperse protein population, making it suitable for downstream biophysical characterization.
The detergent micelle properties of LMNG under the experimental buffer conditions were analyzed using mass photometry. Measurements were performed in SEC buffer having varying concentrations of LMNG in the absence of protein to evaluate the contribution of detergent micelles to the clear molecular mass. At 0.001% (w/v) LMNG, a concentration above the critical micelle concentration (CMC), the predominant peak was detected at approximately 69 kDa, corresponding to LMNG micelles alone without any associated protein (Figure 4A). When the LMNG concentration was reduced to 0.0001% (w/v), below the CMC, the major species shifted to ~48 kDa, indicating the presence of smaller residual LMNG aggregates or submicellar assemblies without protein (Figure 4B). Further in (Figure 4C), TMEM120A M207A was diluted in SEC buffer containing different concentrations of LMNG to assess its oligomeric state by mass photometry. At 0.00001% LMNG (~20x below the CMC, magenta), a predominant peak was observed at approximately 42 kDa, corresponding to the monomer of TMEM120A M207A. At 0.00015% LMNG (~10x below the CMC, blue), the main population at ~86 kDa indicated the presence of dimers. Increasing the LMNG concentration to 0.001% (~2x above the CMC, orange) resulted in a major species ~150 kDa, consistent with protein-detergent complexes. At 0.002% LMNG (~4x above the CMC, green), a broad distribution centered near 180 kDa was detected, representing larger micelle-associated assemblies or higher-order oligomers. These results demonstrate that the LMNG concentration within the SEC buffer strongly influences the clear oligomeric state of TMEM120A M207A, with monomer-dimer equilibrium observed below the CMC and detergent-protein complex formation predominating above the CMC.
The thermodynamic stability of TMEM120A M207A collected from the main SEC peak and kept in SEC buffer (25 mM HEPES, 200 mM NaCl, 0.00015% (w/v) LMNG, pH 7.8) was evaluated by thermal denaturation analysis. The protein exhibited an inflection point at approximately 46 °C, corresponding to its melting temperature (Tm) under these detergent-solubilized conditions. This Tm value indicates moderate thermal stability, suggesting that TMEM120A M207A retains a properly folded conformation within LMNG micelles but may begin to unfold or aggregate at higher temperatures.
Biolayer interferometry (BLI) shows µM binding affinity of TMEM120A M207A to GsMTx4T. The traces in Figure 5 illustrate five experimental steps: (1) baseline, (2) TMEM120A M207A sample loading, (3) baseline to remove nonspecific binding and excess TMEM120A M207A, (4) association, and (5) dissociation. Wavelength shift (nm) is plotted over time for increasing concentrations of GsMTx4 (0, 5, 10, 20, 30, 50, and 100 µM) interacting with immobilized TMEM120A M207A.
During the initial baseline (step 1), the signal remained stable, confirming sensor equilibration in the buffer. TMEM120A M207A loading (step 2) produced a characteristic increase in signal, corresponding to ~50-80% probe saturation across sensors. The loading phase showed a slightly curved response rather than a sharp plateau, possibly reflecting partial mass transport limitation, where TMEM120A M207A diffusion to the sensor surface is slower than the binding rate -- an effect common for membrane or detergent-solubilized proteins that can influence apparent surface coverage.
The subsequent baseline step (step 3) effectively removed unbound or loosely attached TMEM120A M207A. During the association phase (step 4), increasing GsMTx4 concentrations resulted in clear, concentration-dependent increases in wavelength shift. During dissociation (step 5), the biosensor was placed in SEC buffer containing LMNG at ~10x below the CMC. The first 5-10 s of dissociation showed a rapid signal decrease, likely representing fast release of GsMTx4 from readily accessible sites, followed by a slower decay that may reflect more stable TMEM120A M207A-GsMTx4 complexes with slow dissociation kinetics. Reference probe signals remained flat throughout the experiment, indicating minimal nonspecific binding. Overall, these data demonstrate specific TMEM120A M207A-GsMTx4 interactions; however, the observed kinetics should be interpreted cautiously due to the detergent environment and potential mass transport effects.
The association and dissociation sensorgrams of the processed data after reference probe subtraction (Figure 6A) showed concentration-dependent responses for GsMTx4 in the range of 5-100 µM. Increasing ligand concentrations produced progressively higher wavelength shifts, followed by a gradual, slow decrease during the 200 s dissociation phase. The 10 µM dataset was excluded from fitting due to overlap with the 5 µM trace, which improved the overall model quality.
Kinetic analysis was performed using a 1:1 Langmuir association-dissociation model with a local full-fitting strategy, in which individual analyte concentrations were fitted independently within a shared kinetic framework (Figure 6B). The fitted curves (red) were in good agreement with the experimental traces, yielding an estimated dissociation constant (KD) in the low micromolar range. Residual analysis (Figure 6C) did not reveal major systematic deviations, indicating that the applied model was appropriate for the dataset. Minor differences observed during the early association phase may reflect limitations in mass transport or the effects of the detergent micelle environment. Additional examples of fitted association and dissociation curves, residual plots, and fitting statistics across multiple assay replicates and probe positions are shown in Supplemental Figure S8.
In the raw data (Figure 5), the first 5-10 s of dissociation showed a rapid signal decrease, likely representing the fast release of GsMTx4 from readily accessible sites, followed by a slower decay that may reflect more stable TMEM120A M207A-GsMTx4 complexes with slow dissociation kinetics. Therefore, in Table 2, the first 100 s of dissociation were removed from fitting. The lack of systematic deviation indicates a good fit of the local full-fitting Langmuir 1:1 model for TMEM120A M207A at all tested concentrations (Figure 7).
Kinetic analysis of GsMTx4 binding to TMEM120A M207A revealed concentration-dependent association and dissociation behaviors across the 5-100 µM ligand range (Table 1). The observed association rate constants (kon) increased modestly with rising GsMTx4 concentration, ranging from approximately 1.0 × 10⁻⁶ to 3.2 × 10-6 1/M·s, while the estimated dissociation rate constants (koff) remained near zero within the experimental error, suggesting a slow or negligible dissociation phase under the tested conditions. The calculated equilibrium dissociation constants (Kd) were in the low to mid-micromolar range (~0.8-3.3 µM), consistent with a moderate affinity interaction. Local Full fitting using a Langmuir 1:1 binding model yielded high-quality fits across all GsMTx4 concentrations, with correlation coefficients exceeding 0.99 and low relative χ2 values for both association and dissociation phases (Table 1). The calculated equilibrium dissociation constants were consistent across concentrations and replicates, with KD values in the low micromolar range (~1-2 µM), indicating moderate but specific binding between TMEM120A M207A and GsMTx4.
Replicate datasets at each concentration showed reproducibility, as indicated by high correlation coefficients (R² > 0.99) for both association and dissociation fits. The full and relative χ² values were low and comparable across replicates, further supporting the robustness of the 1:1 Langmuir binding model applied in the analysis. At higher ligand concentrations (≥50 µM), slightly increased kon and KD values were observed, which may reflect minor mass transport effects or local surface heterogeneity rather than true affinity changes. Kinetic consistency across multiple replicates and probe positions is further illustrated in Supplemental Figure S9.
The kinetic profiles demonstrate that GsMTx4 interacts specifically and stably with TMEM120A M207A, forming relatively stable complexes characterized by slow dissociation and micromolar binding affinity.

Figure 1: Purification workflow of TMEM120A M207A mutant expressed in HEK293SF-17 suspension cells. Schematic overview of the protein purification procedure. TMEM120A M207A was expressed from pCDNA3.1 plasmids in HEK293SF-17 cells. Cells were solubilized in 0.5% LMNG, followed by affinity purification using anti-FLAG M2 resin. The resin was washed with buffer containing 0.01% LMNG to remove non-specifically bound proteins. TMEM120A M207A was eluted in buffer containing 0.001% LMNG. The eluate was concentrated using either 100 kDa or 30 kDa molecular weight cutoff filters and further purified by size-exclusion chromatography in a buffer containing 0.00015% LMNG. Please click here to view a larger version of this figure.

Figure 2: Size exclusion chromatography and SDS PAGE of purified TMEM120A M207A In LMNG detergent (A) SDS-PAGE of FLAG-tagged TMEM120A M207A purified by size-exclusion chromatography. The protein band appears at ~50 kDa in lane 1, corresponding to the expected monomer. (B) SEC profile of purified TMEM120A M207A on an SEC column in SEC buffer (25 mM HEPES, 200 mM NaCl, 0.00015% LMNG, pH 7.8). Protein elution indicates a predominant monodisperse species suitable for downstream biophysical assays. Please click here to view a larger version of this figure.

Figure 3: Differential scanning fluorimetry of purified TMEM120A M207A in LMNG. DSF reveals a thermodynamic inflection point at 46 °C, indicating the protein's thermal stability under the tested buffer conditions. Please click here to view a larger version of this figure.

Figure 4: characterization of purified TMEM120A M207A in LMNG detergent using mass photometry technique. (A,B) Mass photometry of SEC buffer with varying LMNG concentrations. At 0.001% LMNG (above the critical micelle concentration, CMC), the apparent molecular weight is ~69 kDa, corresponding primarily to LMNG micelles. At 0.0001% LMNG (tenfold below the CMC), the peak appears at ~48 kDa.(C) Mass photometry analysis of LMNG concentration-dependent effects on TMEM120A oligomerization. TMEM120A in 0.00001% LMNG (~20x below the CMC, magenta) exhibits a main population at approximately 42 kDa (monomer). In 0.00015% LMNG (~10x below CMC, blue), a population at ~86 kDa is observed, consistent with the dimer. In 0.001% LMNG (~2x above CMC, orange), a major species at ~150 kDa corresponds to protein-detergent complexes. In 0.002% LMNG (~4x above CMC, green), a broad distribution centered at ~180 kDa indicates larger micelle-associated assemblies or higher-order oligomers. These results demonstrate that LMNG concentration strongly influences the apparent oligomeric state of TMEM120A, with monomer-dimer equilibrium observed below the CMC and protein-detergent complex formation predominating above the CMC. Please click here to view a larger version of this figure.

Figure 5: Raw data from software showing TMEM120A M207A-GsMTx4 interactions. Biolayer interferometry demonstrates that TMEM120A (M207A) binds the mechanosensitive channel inhibitor GsMTx4 with micromolar affinity. The figure shows the raw BLI response data obtained from Gator Prime software, delineating the five key assay phases: (1) Initial baseline, during which the signal remained stable; (2) Protein immobilization (loading), resulting in an increase of approximately 1.5 nm in wavelength shift; (3) Second baseline, allowing removal of unbound or loosely associated protein; (4) Association phase (ligand binding), where increasing GsMTx4 concentrations produced a response rise up to ~5.5 nm within 300 s; and (5) Dissociation phase (ligand release), showing gradual signal decay over 600 s. Please click here to view a larger version of this figure.

Figure 6: Binding kinetics of TMEM120A M207A with GsMTx4 peptide. (A) Association and dissociation sensorgrams of TMEM120A M207A interacting with GsMTx4 at five concentrations: 5 µM, 20 µM, 30 µM, 50 µM, and 100 µM. The 10 µM dataset was excluded from fitting due to overlap with the 5 µM curve, which improved the overall model fit. Vertical dashed red lines indicate the start and end of the dissociation phase.(B) The fitting of the sensorgrams was performed using a Local Full fitting Langmuir 1:1 association-dissociation model. Red curves represent the fitted model, while experimental traces correspond to the measured association and dissociation data for each GsMTx4 concentration (two replicates per condition).(C) Residual plots showing the deviation between experimental data and the fitted model for both association and dissociation phases, confirming the goodness of fit. Please click here to view a larger version of this figure.

Figure 7: Residual plots corresponding to the fitted binding curves shown. Each plot represents the residuals (difference between the experimental data and the fitted model) for a single GsMTx4 concentration: 5 µM, 20 µM, 30 µM, 50 µM, and 100 µM. Residuals are displayed as shift deviation (nm) versus time (s), showing random distribution around zero across both association and dissociation phases. The lack of systematic deviation indicates a good fit of the Local Full fitting Langmuir 1:1 model for TMEM120A M207A at all tested concentrations. Please click here to view a larger version of this figure.
Table 1: Summary of kinetic parameters for TMEM120A M207A binding to GsMTx4. Kinetic parameters were obtained from Local Full fitting using a Langmuir 1:1 binding model. Association (kon), dissociation (koff), observed rate constants (kobs), and equilibrium dissociation constants (KD) are reported for each GsMTx4 concentration and replicate. Fit quality was assessed using R² and χ² values for full, association, and dissociation phases. Across all concentrations, fits showed high correlation coefficients (R² > 0.99) and low relative χ² values, indicating reliable model performance. Notes: M Conc. indicates the concentration of GsMTx4 (µM). kobs represents the observed rate constant reflecting combined association and dissociation processes. Errors reported for kobs, kon, and koff reflect fitting uncertainty. R² values indicate goodness-of-fit for full, association, and dissociation phases. Relative χ² values represent normalized goodness-of-fit metrics, while absolute χ² values indicate residual deviation between observed and fitted data. Abbreviations: kon = association rate constant (1/M·s); koff, = dissociation rate constant (1/s); kobs = observed rate constant (1/s); KD = equilibrium dissociation constant; Rmax = maximum response; Req = equilibrium response. Please click here to download this Table.
Table 2: Processing parameters and residuals of kinetics fitting. Processing parameters: Association start, 0 s; association end, 300 s; dissociation start, 100 s; dissociation end, 300 s. Minimum R² value, 0.9; maximum χ² value, 8. Alignment step: one-step end (index = 1, average = 0). Inter-step correction was applied during the association phase. Association average, 50; dissociation average, 0. Savitzky-Golay smoothing was disabled. Please click here to download this Table.
Supplemental Figure S1: Optimization experiment for loading different concentrations of TMEM120A M207A protein on anti-FLAG probes with a fixed concentration (100 nM) of GsMTx4 peptide. (A) Raw BLI sensorgrams showing the five steps of the kinetic measurement: (1) baseline in SEC buffer or assay buffer (25 mM HEPES, pH 7.8; 200 mM NaCl; 0.00015% (w/v) LMNG; 0.0005% (v/v) Tween-20); (2) loading of four different concentrations of TMEM120A M207A onto the FLAG probe, with the reference probe (orange) used as a negative control to confirm the absence of nonspecific binding; (3) at second baseline step; (4) the association phase, and (5) the dissociation phase. (B) Global 1:1 binding model fits for the four TMEM120A M207A concentrations interacting with 100 nM GsMTx4 peptide. (C) Residual plots for both the association and dissociation phases, showing minimal deviations from the fitted model (<0.05 nm). Please click here to download this File.
Supplemental Figure S2: Plate setup and assay configuration. (A) Plate design for a 384-well plate, where different parameters can be assigned. Samples correspond to the ligand (GsMTx4) at various concentrations. Orange wells indicate TMEM120 M207A protein at 250 nM. Wells represent protein replicates at 250 nM, and the same buffer was used for baseline, association, and dissociation steps.(B) Max Plate view showing four anti-FLAG biosensor probes: one reference probe and three probes for protein replicates. All probes were pre-wetted in assay buffer, regenerated in Q buffer, and neutralized in assay buffer. The same buffer was used throughout baseline, association, and dissociation steps. Please click here to download this File.
Supplemental Figure S3: Assay setup cycles, including baseline, protein loading, second baseline, association, and dissociation. Abbreviations: B = buffer; L = load; 0, 5, 10, 20, 30, 50, and 100 = GsMTx4 concentrations in µM. Please click here to download this File.
Supplemental Figure S4: New kinetics (K) analysis workflow. Select Experiment icon, which provides an overview of all assays performed within a single experiment. Please click here to download this File.
Supplemental Figure S5: New kinetics (K) analysis workflow.Align and Filter icon, where raw data for both association and dissociation phases can be reviewed and analyzed. Please click here to download this File.
Supplemental Figure S6: New kinetics (K) analysis workflow.Set Reference icon, used to select the appropriate reference sensor for background subtraction and accurate data interpretation. Please click here to download this File.
Supplemental Figure S7: Binding fitting steps in the kinetic analysis workflow. Kinetic fitting parameter settings used for analyzing binding interaction data. The model assumes a 1:1 interaction with a single ligand binding site. The fitting type is set to Local, fitting each concentration curve independently rather than globally. The Full fitting option with Full Stitch enabled includes the entire continuous association and dissociation curves. Time windows for association and dissociation phases are set from 0 to 300 s and 0 to 200 s, respectively. In the background, the binding fitting graph, residual graph, and individual assay curves illustrate fit quality and experimental variability. Please click here to download this File.
Supplemental Figure S8: Binding fitting steps in the kinetic analysis workflow. Binding fitting graph showing association and dissociation phases across multiple assay replicates and probe positions (C1 and D1). The residual graph below assesses fit quality, with residuals indicating differences between the experimental data and the fitted model; values near zero reflect a good fit. The accompanying table summarizes fitting statistics, including Full R², Association R², Dissociation R², and Chi-square (X²) values for each replicate. Please click here to download this File.
Supplemental Figure S9: Binding fitting steps in the kinetic analysis workflow. Kinetic analysis of binding interactions from multiple replicates and probe positions (C1 and D1). The sensor response shift (nm) over time (s) displays association and dissociation phases, with each curve color-coded by assay and probe position. The vertical dashed red line marks the transition between association (0-300 s) and dissociation phases. Below, the table reports kinetic parameters derived from the 1:1 binding model fit, including analyte concentration (M Conc.), association rate constant (kon), dissociation rate constant (koff), errors, and the equilibrium dissociation constant (KD). The consistent fit quality supports the robustness of the kinetic measurements. Please click here to download this File.
Supplemental Table S1: Table illustrating the symbols used in both the 384-well plate and the Max Plate. Please click here to download this File.
Supplemental Table S2: Kinetic parameters obtained for the four concentrations of TMEM120A M207A loaded onto FLAG biosensors interacting with 100 nM GsMTx4 peptide, using fixed kon and koff values. Please click here to download this File.