This manuscript presents an in vitro protocol for generating tumor-associated macrophage-like cells by exposing human monocytes to conditioned media from tumor cell lines.
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Method Article
This manuscript presents an in vitro protocol for generating tumor-associated macrophage-like cells by exposing human monocytes to conditioned media from tumor cell lines.
Macrophages exhibit remarkable plasticity, enabling them to acquire distinct functional states in response to a variety of environmental cues. In solid tumors, they frequently constitute the most abundant immune cell population within the tumor microenvironment, where they are referred to as tumor-associated macrophages (TAMs). TAMs closely interact with malignant cells, actively promoting tumor progression, angiogenesis, and immune evasion. Tumor cells can reprogram macrophages through direct cell-cell contact and a wide array of secreted factors, shaping their polarization toward pro-tumoral phenotypes. To study these TAM polarization mechanisms in vitro, we propose a method that exposes human monocytes to soluble factors present in tumor cell line-conditioned media. This protocol enables the generation of TAM-like macrophages under controlled conditions, facilitating the analysis of phenotypic and functional changes induced by tumor-derived signals. Our approach offers a reproducible and physiologically relevant model to investigate tumor-macrophage interactions, deepens our understanding of macrophage reprogramming, and supports research into novel therapeutic strategies in cancer immunology and immunotherapy.
Macrophages are multifunctional innate immune cells whose remarkable plasticity enables them to adopt diverse phenotypes in response to environmental cues1. Within solid tumors, macrophages often become the most abundant immune cell population and differentiate into tumor-associated macrophages (TAMs)2. These cells are actively reprogrammed by the tumor microenvironment to support tumor growth, promote angiogenesis, facilitate metastasis, and suppress effective antitumor immune responses. Tumor cells drive this polarization through both direct cell-cell interactions and a complex repertoire of secreted factors, including cytokines, chemokines, and growth factors, which reshape macrophage transcriptional and functional programs3. This dynamic interplay underpins the central role of TAMs in cancer biology and highlights macrophage plasticity as both a challenge and an opportunity for therapeutic intervention2.
The clinical relevance of TAMs is increasingly recognized: their abundance in tumors often correlates with poor prognosis and resistance to therapies4,5. Consequently, TAMs6 have emerged as attractive therapeutic targets. Strategies aimed at blocking their recruitment, inhibiting their survival, or reprogramming them toward inflammatory and tumoricidal phenotypes are currently under investigation6. Understanding the mechanisms by which tumor-derived factors polarize macrophages into TAMs is thus essential for developing effective immunotherapies. While immune checkpoint blockade has shown great success in many cancers, its efficacy remains limited in others7. Combining T cell-targeted therapies, such as anti-Programmed Cell Death Protein 1 (PD-1) or anti-Programmed Cell Death Ligand 1 (PDL-1) antibodies, with macrophage reprogramming strategies may enhance the overall antitumor immune response.
Traditional experimental models to study TAM biology have included in vivo murine cancer models, which offer a complex and physiologically relevant environment8. These models have provided fundamental insights into TAM recruitment and function. However, significant interspecies differences in immune signaling, tumor biology, and macrophage ontogeny can limit direct translation to human disease9,10. Moreover, the complexity of in vivo systems makes it challenging to isolate and study specific signaling pathways or molecular events that drive macrophage polarization.
In contrast, in vitro models offer simpler and controlled conditions to dissect these mechanisms. The most widely used approach involves polarizing human monocyte-derived macrophages with defined stimuli: Interferon gamma (IFN) and bacterial lipopolysaccharide (LPS) to generate pro-inflammatory macrophages (M1), or Interleukin 4 (IL-4) and interleukin 10 (IL-10), or dexamethasone to obtain various anti-inflammatory macrophage (M2) subtypes11,12,13,14. These models have helped identify molecular markers and transcriptional programs associated with canonical macrophage polarization states. Nonetheless, they fall short of replicating the complex, multifactorial environment that macrophages encounter within tumors, where polarization results from the simultaneous influence of numerous soluble mediators, metabolic signals, and cell-to-cell interactions15,16. Although the classical M1/M2 classification remains useful to describe macrophage functional states, it is now clear that many more macrophage populations exist than previously thought. The work of Dr. Ginhoux's group and others, using single-cell transcriptomic approaches, has demonstrated the broad diversity of macrophage subsets found both under physiological conditions and in disease17,18. This highlights that TAMs, although often described as resembling M2-like profiles, are not strictly equivalent to macrophages differentiated solely with canonical cytokines; rather, they share certain features but also display distinct and context-dependent differences.
To bridge this gap, we present an in vitro protocol that models TAM-like polarization by exposing human monocyte-derived macrophages to conditioned media collected from tumor cell lines. This method captures the influence of the tumor secretome, a rich mixture of cytokines, chemokines, and growth factors secreted by cancer cells. It thus offers a relevant and experimentally accessible system to investigate the phenotypic and transcriptional reprogramming of macrophages in response to tumor-derived soluble factors. Unlike previous approaches in which monocytes were directly exposed to tumor-conditioned media, this protocol specifically focuses on the reprogramming of macrophages, thereby better reflecting resident macrophage behavior within the tumor microenvironment19,20. In addition, it incorporates an optimized and straightforward panel of surface markers to assess macrophage polarization by flow cytometry, which is easy to implement and can be expanded according to the investigator's needs14,21. Finally, since M-CSF has been shown to prime monocytes toward an M2-like phenotype10,15,22,23,24, we deliberately omitted it to ensure that any observed macrophage polarization results specifically from exposure to tumor cell line-derived conditioned media.
This approach has several strengths: it retains the reproducibility and simplicity of in vitro systems, uses primary human cells for greater translational relevance, and reflects the heterogeneous, multifactorial nature of the tumor microenvironment better than single-cytokine models25,26,27,28. Moreover, it facilitates comparative studies of macrophage responses to conditioned media from different tumor types or genetically modified cancer cells, and serves as a platform to test pharmacological agents that may alter TAM polarization. Beyond its general applicability, this method can be tailored to different tumor models by selecting appropriate cell lines or adjusting the proportion of conditioned media. Nonetheless, users should be aware that variability across healthy donors and tumor cell lines may affect reproducibility, underscoring the importance of careful experimental design and standardization.
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Peripheral blood samples were collected from healthy donors after informed consent in accordance with the Declaration of Helsinki. This protocol was approved by the Institutional Ethics Committee of the University of Buenos Aires. See the Table of Materials for details about all materials and reagents used in this protocol.
NOTE: Maintain sterile conditions throughout the whole protocol, working in a Biosafety level 2 (BSL-2) cabinet, and ensure cell viability >90%. For disposal, all biological waste must first be decontaminated by soaking in a 10% sodium hypochlorite solution for at least 30 min, and then placed in the appropriate biohazard disposal container.
1. Tumor cell line culture and conditioned media preparation
2. Isolation of peripheral blood mononuclear cells (PBMCs)
NOTE: PBMCs are isolated from 40 mL of peripheral blood anticoagulated with 3.8% sodium citrate. The isolation is performed using a Ficoll-Hypaque density gradient (1077) and centrifugation. This entire protocol must be conducted under sterile conditions in a BSL2 cabinet.
3. CD14+ monocyte sorting using magnetic beads
NOTE: Purified CD14+ monocytes are obtained from PBMC using a human CD14+ positive selection magnetic sorting kit11. CD14+ cell percentage in PBMC is donor-dependent but can be estimated at 10% (ranging from 5-20%). Adapt the initial number of PBMC and the final reaction volumes based on the required number of monocytes for your experiment. The suggested minimum reaction volume is 100 µL, even when processing fewer than 1 × 107 PBMC.
4. Differentiation of macrophages
5. Exposure of macrophages to conditioned media and analysis
6. Harvest macrophages for evaluation of polarization markers by flow cytometry
NOTE: Optionally, to further extend the phenotype characterization of tumor-associated macrophages, isolate RNA to measure the expression of polarization-associated genes (e.g., TGM2, IRF-4, and CXCL10) by quantitative polymerase chain reaction (qPCR) or collect the culture supernatants for measurement of canonical cytokine production (e.g., TNFα, IL-6, and IL-10) by enzyme-linked immunosorbent assay (ELISA) as reported by our group11,14.
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We generated triple-negative breast cancer tumor-associated macrophages (TAM)-like cells by treating monocyte-derived macrophages with 50% conditioned media (CM) from the MDA-MB-231 cell line. Monocytes were sorted from peripheral blood mononuclear cells (PBMC) of six independent healthy donors and differentiated following our protocol. The CM preparation utilized MDA-MB-231 cells at 90 % confluency (Figure 1). CM was added to the macrophage ...
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The protocol described here provides a reproducible and practical approach to study tumor-associated macrophage-like polarization by exposing human monocyte-derived macrophages to tumor cell line-conditioned media. This system captures the influence of soluble factors secreted by tumor cells, which are known to play a pivotal role in macrophage reprogramming within the tumor microenvironment7,9,10,15...
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The authors have no conflicts of interest to disclose.
We acknowledge the financial support provided by the National Agency for the Promotion of Science and Technology (ANPCyT-FONCYT) through grants PICT 2021 I-INVI-00034 (to DR), PICT 2021-I-A-00807 (to E.A.C.S.), and PICT 2021-I-A-00716 (to A.E.E.). We also thank the National Scientific and Technical Research Council (CONICET) for grant PIP 2022-0763 and the University of Buenos Aires for PIDAE 2022, awarded to A.E.E.
M.C.L. was recipient of Legado Peruilh fellowship from School of Medicine, Buenos Aires University, and is recipient of an ANPCyT-FONCYT doctoral fellowship. D.R., E.A.C.S., and A.E.E. are career investigators at CONICET.
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| Alexa Fluor 488 mouse anti-human CD206 Antibody clone 15-2 | BioLegend, San Diego, CA, USA. | Cat# 321113; RRID:AB_571874 | |
| Alexa Fluor 647 mouse anti-human CD64 Antibody clone 10.1 | BioLegend, San Diego, CA, USA. | Cat# 305012; RRID:AB_528867 | |
| BD Cytofix/Cytoperm | BD Biosciences, San Jose, CA, USA | Cat# 554714 | fixative/permeabilization kit |
| Dulbecco's Modified Eagle Medium (DMEM), high glucose | Gibco Thermo Fisher Scientific, Waltham, MA USA | Cat# 11965092 | |
| EasySep Human CD14 Positive Selection Kit; EasySep Positive Selection Cocktail; EasySep magnetic Nanoparticles; Easy Sep Magnet | STEMCELL Technologies, Vancouver, Canada | Cat# 18058 | |
| FACS Canto cytometer | Becton Dickinson, Franklin Lakes, New Jersey, USA. | ||
| Fetal Bovine Serum, qualified, New Zealand | Gibco™ Thermo Fisher Scientific, Waltham, MA USA | Cat# 10091148 | |
| Ficoll-Paque PLUS Cytiva | GE Healthcare - Life Sciences, USA | Cat# 17144003 | |
| FlowJo | FlowJo LLC. | RRID:SCR_008520 | |
| GraphPad Prism | GraphPad Software Inc. | RRID:SCR_002798 | |
| Partec CyFlow space cytometer | Sysmex Partec, Germany | ||
| PE anti-human HLA-DR Antibody clone L243 | BioLegend, San Diego, CA, USA. | Cat# 307605; RRID:AB_314683 | |
| PE/Cy7 rat anti-mouse/human CD11b Antibody clone M1/70 | BioLegend, San Diego, CA, USA. | Cat# 101216; RRID:AB_312799 | |
| PerCP/Cy5.5 mouse anti-human CD163 Antibody clone GHI/61 | BioLegend, San Diego, CA, USA. | Cat# 333607; RRID:AB_1134006 | |
| RPMI 1640 Medium | Gibco Thermo Fisher Scientific, Waltham, MA USA | Cat# 11875119 | |
| Sodium pyruvate solution | Sigma-Aldrich Merck, San Luis, MO, USA. | Cat# S8636 | |
| Trypsin-EDTA (0.25%), phenol red | Gibco Thermo Fisher Scientific, Waltham, MA USA | Cat# 25200056 | |
| Zombie Violet Fixable Viability Kit | BioLegend, San Diego, CA, USA. | Cat# 423113 |
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