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All hazardous chemicals (e.g., glutaraldehyde, sodium cacodylate buffer, Hexamethyldisilazane [HMDS], and ethanol) were handled in accordance with institutional Environmental Health and Safety (EHS) policies. Preparation and use of volatile/toxic reagents were performed in a certified chemical fume hood with appropriate personal protective equipment (lab coat, eye protection, and chemically resistant gloves), and flammable solvents were kept away from ignition sources. Chemical wastes were segregated and collected in properly labeled containers (including dedicated arsenic-containing waste for cacodylate and solvent waste for HMDS/ethanol) for disposal through the institutional hazardous-waste program. Biohazardous materials (bacterial cultures, contaminated plates, and disposables) were decontaminated according to biosafety procedures (e.g., autoclaving or approved disinfectants) prior to disposal, and any ethylene oxide sterilization was conducted in accordance with certified facility protocols and required aeration practices.
3D printed models
The models were designed using free computer-aided design software and printed using a 3D printer equipped with fused deposition modeling technology, with 1.75 mm (diameter) filaments of polylactic acid (PLA) and polyethylene terephthalate glycol (PETG) (Table of materials). The printing parameters used for fabricating the specimens were as follows: nozzle (0.4 mm) movement speed of 1800 mm/min; first layer speed of 300 mm/min; nozzle temperature of extrusion of 220 °C (PLA) and 255 °C (PETG); bed temperature of 60 °C; layer height of 0.08 mm; extrusion width of 0.48 mm and; infill density of 100% for all samples. None of the samples required the use of support structures. 3D models consisted of discs, flat-bottom plates, the Calgary biofilm device (CBD), and the modified Robbins device (MRD). The discs were designed as a cylinder with a 6 mm (diameter) x 6 mm (height).
For the CBD, a model was created (Table of materials). The CBD consisted of two parts: a base plate, a standard 96-well microtiter plate (ANSI/SLAS format), and a lid (peg plate): a polymer (PLA or PETG) lid with 96 cylindrical pegs with 2 mm (diameter) and 5 mm (height). The MRD was developed with 4 mm (diameter and height) pins fixed in a screw-thread model (Table of materials). After completing the printing process, the models were carefully removed from the build plate, visually inspected for any deformations, and subsequently sterilized with ethylene oxide.
Disc model of static biofilm
This method was used to induce biofilm formation on PLA using the previously described 6 mm × 6 mm cylindrical discs23 (Figure 1).

Figure 1: PLA and PETG discs and a 24-well plate for biofilm formation on these discs’ models. (A) Representative 3D-printed PLA and PETG discs prior to bacterial inoculation and biofilm formation. (B) PLA and PETG discs positioned in a 24-well plate during biofilm induction under in vitro culture conditions. Abbreviations; PLA = polylactic acid; PETG = polyethylene terephthalate glycol modified. Please click here to view a larger version of this figure.
S. aureus was stored at −80 °C in tryptic soy broth (TSB) supplemented with 15% glycerol and, prior to each experiment, was cultured on blood agar and incubated for 24 h at 37 °C. An isolated colony was resuspended in 10 mL of TSB supplemented with 50 mM glucose, added to a 50 mL conical tube, and incubated for 24 h at 37 °C in an orbital shaker at 120 rpm. The resulting culture was centrifuged for 5 min at 200 x g, and the supernatant was discarded. The pellet was washed three times with 10 mL of sterile 0.9% NaCl. In the final washing step, the pellet was resuspended in 10 mL of fresh TSB to obtain a bacterial suspension with a turbidity equivalent to the 0.5 McFarland standard (approximately 1.5 × 108 CFU/mL), as determined by nephelometry. The suspension was then diluted 1:10 in 10 mL of TSB in a 15 mL conical tube to achieve a final bacterial concentration of 107 CFU/mL. For experiments with discs, 2 mL of the previous bacterial suspension was added to each well of sterile 24-well plates to cover each group of discs (PLA and PETG) for 2 h to allow cell adhesion. The discs were then aseptically transferred using sterile tweezers to a new sterile 24-well plate containing 2 mL of 0.9% NaCl to remove planktonic cells. Fresh 10 mL of TSB was added to the wells, and the plates were incubated at 37 °C for 24 h. During this step, cells adhering to the disc surfaces formed a biofilm. Following incubation, the culture medium was aspirated, and the discs were washed with 2 mL of 0.9% NaCl to remove residual medium and non-adherent cells. A 24-well plate was prepared with 1 mL of vancomycin solution at serial dilutions (2–4,096 mg/L), and the discs were submerged for 24 h. A control group without vancomycin (NaCl 0.9%) was included. After 24 h, the discs were washed with 2 mL NaCl 0.9%.
To quantify adhered bacteria on the discs, each disc was transferred using sterile tweezers to a microtube containing 1 mL of sterile 0.9% NaCl and sonicated in an ultrasonic bath for 15 min at 40 kHz and 37 °C to detach the adhered cells. The microtubes were vortexed for 60 s to ensure complete disaggregation of cell clusters. Aliquots of 100 µL of the undiluted sample (10°) and 10⁻2 and 10⁻4 dilutions in sterile 0.9% NaCl were plated on TSA and incubated for 24 h at 37 °C. Bacterial growth was quantified by counting CFU on a plate and expressed as CFU/mL.
24-well flat-bottom plates for minimal biofilm eradication concentration
For experiments in 24-well plates, 3 mL of bacterial suspension (prepared as described above) was added to each well for 2 h to allow adequate cell adhesion. Afterwards, the bacterial suspension was aspirated, and 3 mL of sterile 0.9% NaCl was added to remove planktonic cells. Fresh 3 mL of TSB was then added, and the plates were incubated at 37 °C for 24 h. During this step, cells adhering to the well surfaces formed a biofilm. Following incubation, the TSB was aspirated, and the wells were washed with 3 mL of 0.9% NaCl to remove residual medium and non-adherent cells. 3 mL of vancomycin solution at serial dilutions (2–4,096 mg/L) was added to each well. A control group without vancomycin (NaCl 0.9%) was included.
After 24 h, the solution was removed, and each well was gently washed twice with 3 mL of 0.9% NaCl. Three milliliters of 0.9% NaCl were added to each well, the plate was capped and sealed with parafilm, and then sonicated in an ultrasonic bath for 15 min at 40 kHz and 37 °C to detach the adhered biofilm. Aliquots of 100 µL were collected from the wells, and the undiluted sample (10°) and 10⁻2 and 10⁻4 dilutions prepared in sterile 0.9% NaCl were plated on TSA and incubated for 24 h at 37 °C. Bacterial growth was then quantified by counting CFU/mL. All experiments were performed in triplicate. Minimal biofilm eradication concentration (MBEC) was defined to be a reduction of at least 3 log10 in comparison with the control group (Figure 2).

Figure 2: Printed 24-well plates. (A) 24-well plates printed with PLA. (B) 24-well plates printed with PETG. Abbreviations; PLA = polylactic acid; PETG = Polyethylene terephthalate glycol. Please click here to view a larger version of this figure.
The Calgary biofilm device
The CBD consists of a 96-well microtiter plate and a lid with 96 pegs, each designed to fit precisely into a well when the lid is placed on the plate. To induce biofilm formation, each well of a sterile 96-well plate was filled with 200 µL of the bacterial suspension, and sterile peg lids were then placed onto the plate. The assembled plates were incubated at 37 °C for 24 h under static conditions to allow biofilm development on the pegs. Following incubation, the peg lids were gently rinsed in a 96-well plate containing 200 µL of 0.9% NaCl to remove planktonic cells. The plate with the pegs was submerged in another 96-well plate containing vancomycin at progressive concentrations (2–4,096 mg/L) and incubated at 37 °C for 24 h under static conditions.
The plate with pegs was rinsed in a 96-well plate containing 200 µL of 0.9% NaCl, and the pegs were carefully stamped in a 15 cm TSA plate and incubated at 37 °C for 24 h. Bacterial growth was observed, and MBEC was defined as the lowest concentration at which no growth occurred. All experiments were performed in triplicate (Figure 3).

Figure 3: Calgary device and 96-well flat-bottom plates printed with PLA and PETG. (A) Calgary device printed with PLA. (B) 96-well flat-bottom plates printed with PLA. (C) Calgary device printed with PETG. (D) 96-well flat-bottom plates printed with PETG. Abbreviations; PLA = polylactic acid; PETG = polyethylene terephthalate glycol. Please click here to view a larger version of this figure.
A dynamic system under continuous conditions of flow
Each MRD contains five individual pegs fixed in a screw-thread model and arranged linearly along a channel with a rectangular cross-section. The dynamic system consisted of a flask containing 1 L of solution with the antibiotic to be tested connected to a peristaltic pump via a silicone tube coupled to the MRD. Assembly was done in a laminar air flow cabinet to prevent contamination. The medium flow rate was maintained at 1 mL/min and circulated through the system for 24 h. The fluid passing through the MRD is discarded into another glass flask (without recirculation).
S. aureus biofilms were induced on the pegs of an MRD, dropping the pegs on 24-well plates with TSB with 3 mL at a concentration of 107 CFU/mL. The pegs were gently rinsed by immersion in a 24-well plate filled with 3 mL of 0.9% NaCl solution. The pegs were carefully screwed into the MRD (n = 5). Vancomycin solution (40 mg/L) diluted in 0.9% NaCl was infused through the MDR using the pump as described above for 24 h. A control group without antibiotics (0.9% NaCl) was included. This concentration was chosen based on the serum concentration obtained during high doses of intravenous vancomycin, as previously described24. The pins were aseptically removed from the MRD using sterile tweezers, placed in microtubes containing 1 mL of sterile 0.9% NaCl after washing with 0.9% NaCl, and sonicated in an ultrasonic bath for 15 min at 40 kHz and 37 °C to ensure complete detachment of the biofilm. The microtubes were vortexed for 60 s, and the procedure was repeated three times to disrupt residual biofilm aggregates. Aliquots of 100 µL were plated on TSA, and the plates were incubated for 24 h at 37 °C. Bacterial growth was quantified and expressed as CFU/mL (Figure 4).

Figure 4: Modified Robbins device with PETG and PLA and a photo of the dynamic system. (A) modified Robbins device printed with PETG or PLA. (B) Photo of the dynamic system. Abbreviations; PLA = polylactic acid; PETG = polyethylene terephthalate glycol. Please click here to view a larger version of this figure.
Scanning electron microscopy
To visualize the morphology and structure of the biofilms, scanning electron microscopy (SEM) was performed on the discs. Biofilm was induced on discs as described in the protocols. The discs were carefully removed from the plate using sterile tweezers and were fixed with a solution (0.68 g sucrose, 0.42 g sodium cacodylate, 0.6 mL 30% glutaraldehyde), with 19.4 mL of deionized water, for 45 min. Subsequently, the specimens were transferred to a buffer solution (0.68 g sucrose and 0.42 g sodium cacodylate) for 10 min. The samples were then dehydrated in a graded ethanol series (35%, 50%, 70%, and 100%) for 10 min each. Afterwards, the specimens were transferred to another Petri dish and covered with 100% hexamethyl disilazane for 10 min. Finally, the discs were sputter-coated with gold using a rotary pump and mounted on a metal stub for observation under different magnifications on a scanning electron microscope (Figure 5).

Figure 5: Scanning electron microscopy of PLA and PETG 3D printed models with and without biofilm induction. (A) Scanning electron microscopy photograph of PLA without biofilm. (B) Scanning electron microscopy photograph of PETG without biofilm. (C) Scanning electron microscopy photograph of biofilm-forming bacteria on PLA discs. (D) Scanning electron microscopy photograph of biofilm-forming bacteria on PETG discs. C and D show typical features of biofilms: bacterial organization into a 3D structure, adherence to surfaces, and the presence of an extracellular matrix. White scalebar represents 10 µm. Abbreviations; PLA = polylactic acid; PETG = Polyethylene Terephthalate Glycol. Please click here to view a larger version of this figure.
Statistical analysis
Some analyses were descriptive. For quantitative data, the sample size justified the use of the median with the interquartile range, with the Mann-Whitney test for statistical comparison. A p-value < 0.05 was considered statistically significant.