| 2x PCR Master Mix | Takara Bio Inc., Japan | RR902A | Used for 16S rRNA PCR amplification |
| Acetonitrile | Merck, Germany | 100030 | Solvent used for UHPLC mobile phase |
| Anesthesia vaporizer | RWD Life Science | R580 | Used to deliver isoflurane anesthesia to mice |
| Automatic biochemical analyser | Jian Cheng Biological Engineering Institute, Nanjing, China | A110-1 & A111-1 | Measures serum parameters (glucose, TC, TG, LDL-c, HDL-c, AST, ALT) and liver lipid levels |
| Bacillus coagulans (GIM 1.645) | Guangdong Microbial Culture Collection Center, China | GIM 1.645 | Component strain of probiotic formulation |
| Carboxymethylcellulose sodium (CMC-Na) | Sigma-Aldrich, USA | C4888 | Used as emulsifier component for DHA-rich microalgae oil preparation |
| Catalase (CAT) assay kit | Nanjing Construction Ltd. | A007-1-1 | Detects CAT activity (an indicator of antioxidant capacity) in liver tissue |
| DADA2 software package | DADA2 Development Team | Included in QIIME 2 v2019.4 | Used for denoising and chimera filtering of sequencing reads |
| DHA-rich microalgae oil (Schizochytrium sp.-derived) | - | - | Rich in docosahexaenoic acid (DHA); administered daily by gavage at 10µL/g as the experimental intervention |
| Experimental animals (Male C57BL/6J mice) | Beijing Vital River Laboratory Animal Technology Co. | - | 6 weeks old, n = 4 per group; used for establishing the MASLD model via HFD feeding |
| Formic acid | Sigma-Aldrich, USA | F0507 | Mobile phase additive for metabolomics analysis |
| Greengenes database | Greengenes | Version 13_8 | Used for microbial taxonomic assignment |
| High-Fat Diet (HFD) | Research Diets Inc., USA | D12492 | Composed of 20% carbohydrates, 20% protein, 60% fat (kcal); fed for 8 weeks to induce MASLD |
| High-resolution mass spectrometer | Thermo Fisher Scientific, USA | Q Exactive Orbitrap | Used for metabolite detection in positive and negative ion modes |
| Human Metabolome Database (HMDB) | University of Alberta, Canada | 2024 release | Public metabolite annotation database |
| Illumina MiSeq platform | Illumina, Inc., USA | MiSeq System | Used for paired-end 2 × 250 bp sequencing |
| Isoflurane | Merck, Germany | PHR2874 | Used for inhalation anesthesia in mice |
| Kyoto Encyclopedia of Genes and Genomes (KEGG) | Kanehisa Laboratories, Japan | Version 2023 | Database used for pathway enrichment and metabolite annotation |
| Lactobacillus acidophilus (KDB-03) | Shandong Academy of Agricultural Sciences, China | - | Component strain of probiotic formulation |
| Lactobacillus casei (KDB-LC) | Shandong Academy of Agricultural Sciences, China | - | Component strain of probiotic formulation |
| Lactobacillus plantarum (DY-1) | Shandong Academy of Agricultural Sciences, China | - | Component strain of probiotic formulation |
| Liquid nitrogen | Air Liquide | - | Used for rapid freezing and preservation of fecal and liver samples |
| Malondialdehyde (MDA) assay kit | Nanjing Construction Ltd. | A003-1 | Detects MDA (a marker of lipid peroxidation/oxidative damage) in liver tissue |
| MassLynx software | Waters Corporation, USA | Version 4.1 | Used for metabolomics raw data processing, feature extraction, and normalization |
| Methanol | Merck, Germany | 106035 | Solvent used for metabolite extraction |
| Microbiome data analysis platform | Genescloud | V1 | Online platform: https://www.genescloud.cn/home; used for PCoA, NMDS, LEfSe and other microbiome visualization analyses |
| OMEGA Soil DNA Kit | Omega Bio-Tek, Norcross, GA, USA) | (M5635-02) | DNA Isolation |
| OTUs reference sequences | Genescloud | | Referenced from McDonald et al. 2012; used for taxonomy assignment of amplicon sequence variants (ASVs) |
| Phosphate-buffered saline (PBS) | Gibco, Thermo Fisher Scientific, USA | 10010023 | Used for bacterial pellet resuspension |
| Primer 341F/806R | Tsingke Biotechnology Co., Ltd., China | - | Used for amplification of the 16S rRNA V3–V4 region. 341F: 5′-CCTACGGGNGGCWGCAG-3′; 806R: 5′-GGACTACHVGGGTATCTAAT-3′ |
| Probiotics | - | - | Specific strains not explicitly mentioned; used as a comparative intervention (mainly improves glucose homeostasis) |
| QIIME 2 software | - | 2019.4 | Used for microbiome bioinformatics analysis (ASV processing, alpha/beta diversity calculation) |
| R software | - | 4.4.1 | Used for liver metabolite enrichment analysis and Spearman correlation analysis of microbial-metabolite associations |
| Refrigerated centrifuge | Eppendorf, Germany | 5810R | Used for serum and metabolomics sample centrifugation |
| Reverse-phase C18 column | Waters Corporation, USA | 186002350 | Used for chromatographic separation of metabolites |
| Saline | Shijiazhuang No.4 Pharmaceutical | 2211112304 | Administered daily by gavage to the control group (vs. microalgae oil treatment) |
| Standard chow diet | Keao Xieli Feed Ltd., China | 1016706714625204224 | Composed of 70% carbohydrates, 20% protein, 10% fat (kcal); fed to the control (RC) group |
| Sterile feeding needle | Instech Laboratories, USA | FTP-20-38 | Used for oral gavage administration |
| Superoxide dismutase (SOD) assay kit | Nanjing Construction Ltd. | A001-3 | Detects SOD activity (an indicator of antioxidant capacity) in liver tissue |
| Tween-80 | Sigma-Aldrich, USA | P4780 | Used as emulsifier component for DHA-rich microalgae oil preparation |
| Ultrasonic homogenizer | Scientz Biotechnology, China | JY92-IIN | Used for liver tissue sonication during metabolite extraction |
| Untargeted Hepatic Metabolomics | Metabo-Profile Biotechnology (Shanghai) Co., Ltd. | Project Code: P035Y23A13_SFMU_MJWang_SH | |
| Vortex mixer | Thermo Fisher Scientific, USA | LP Vortex Mixer | Used for sample homogenization and emulsification |