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This cross-sectional observational study was conducted in accordance with the Declaration of Helsinki and was approved by the Ethics Committee of Jinan Central Hospital (Approval No. 20250120022). All procedures involving human participants were reviewed and approved prior to study initiation. Written informed consent was obtained from all participants before enrollment.
Adult outpatients presenting to the gastroenterology clinic with functional bloating (FB) as their primary complaint were screened consecutively for study participation. Functional bloating was defined according to the Rome IV criteria as recurrent abdominal bloating or distension occurring at least 1 day per week on average during the previous 3 months, with symptom onset at least 6 months before diagnosis. A comprehensive clinical exclusion workup, including routine laboratory testing, abdominal imaging, and endoscopic evaluation when clinically indicated, was performed to exclude structural or metabolic causes of symptoms. Participants meeting diagnostic criteria for overlapping irritable bowel syndrome (IBS) subtypes (IBS-C, IBS-D, or IBS-M) were permitted to participate and were prospectively classified by subtype, provided that bloating remained their predominant and most bothersome presenting complaint.
To minimize confounding effects on baseline breath-gas profiles, participants with uncontrolled diabetes, prior major gastrointestinal surgery, or severe refractory constipation requiring daily medical intervention were excluded. In addition, a standardized pre-test medication washout protocol was implemented. Systemic antibiotics and probiotics were prohibited within 4 weeks before testing, whereas prokinetics, laxatives, opioids, and proton-pump inhibitors were withheld for at least 1 week before the procedure.
Participant recruitment was conducted between February 2025 and December 2025 at the outpatient gastroenterology clinic of Jinan Central Hospital. Eligible symptomatic adults were enrolled consecutively without additional arbitrary selection criteria to minimize selection bias. The overall study workflow is shown in Figure 11.

Figure 1. Study design and lactulose hydrogen–methane breath-testing workflow. Adult outpatients presenting with functional bloating were screened for eligibility and enrolled after written informed consent. Baseline demographic and clinical variables were recorded before testing. Participants underwent standardized pre-test preparation consisting of a 24 h low-fermentation diet and an 8–12 h overnight fast. Lactulose hydrogen–methane breath testing (LHMBT) was performed following ingestion of 10 g lactulose dissolved in 200 mL water, with end-expiratory breath samples collected at 0, 30, 60, 90, and 120 min. Breath-test results were interpreted using predefined hydrogen and methane criteria and participants were classified as negative, hydrogen-positive, methane-positive, or mixed-positive. Clinical symptom comparisons and phenotype-specific analyses were subsequently performed. Please click here to view a larger version of this figure.
Study Population, Eligibility, and Baseline Assessment
Eligible participants were adults aged 18–65 years who presented with recurrent or persistent bloating for more than 3 months, with symptom onset at least 6 months before enrollment. These temporal symptom requirements were selected to align with the Rome IV diagnostic framework for functional bowel disorders. Participants were also required to be capable of completing both the symptom assessment and the serial breath-testing procedure. Participants were excluded if they had inflammatory bowel disease, celiac disease, gastrointestinal malignancy, intestinal obstruction, prior significant small-bowel or colonic resection, decompensated liver disease, pregnancy, acute infectious gastroenteritis within the previous 4 weeks, systemic antibiotic exposure within the previous 4 weeks, colonoscopy bowel preparation within the previous 2 weeks, or an inability to comply with pre-test dietary and fasting instructions.
Age, sex, height, weight, body mass index (BMI), symptom duration, bloating severity, abdominal pain severity, average number of spontaneous bowel movements per week, and clinical subtype based on bowel habit pattern (functional bloating, IBS-C, IBS-D, or IBS-M) were prospectively recorded at enrollment using a structured case report form. Bloating severity and abdominal pain severity were assessed using a numerical rating scale (NRS) ranging from 0 to 10, where 0 indicated no symptoms and 10 indicated the most severe symptoms imaginable. Stool frequency was defined as the average number of spontaneous bowel movements per week during the preceding 4 weeks. The study variables and corresponding coding rules are summarized in Table 16.
| Variable / Term | Definition | Coding / Unit | Notes |
| Functional bloating (FB) | Recurrent or persistent bothersome abdominal bloating without identified structural gastrointestinal disease on routine evaluation | Inclusion variable | Required for enrollment |
| Lactulose hydrogen–methane breath testing (LHMBT) | Standardized lactulose-based dual-gas breath test measuring exhaled hydrogen and methane | Procedure | Main study test |
| Age | Age at enrollment | Years | Continuous |
| Sex | Biological sex recorded at enrollment | Male / Female | Categorical |
| Body mass index (BMI) | Weight divided by height squared | kg/m² | Continuous |
| Symptom duration | Duration of bloating symptoms before enrollment | Months | Continuous |
| Clinical subtype | Symptom-based bowel phenotype recorded at enrollment | Functional bloating / IBS-C / IBS-D / IBS-M | Categorical |
| Bloating severity | Participant-reported bloating severity | 0–10 NRS | 0 = none; 10 = most severe |
| Abdominal pain severity | Participant-reported abdominal pain severity | 0–10 NRS | 0 = none; 10 = most severe |
| Constipation score | Composite constipation burden | 0–3 | Higher score = greater constipation burden |
| Diarrhea score | Composite diarrhea burden | 0–3 | Higher score = greater diarrhea burden |
| H2_0 | Baseline exhaled hydrogen | ppm | Measured at 0 min |
| H2_30 | Exhaled hydrogen at 30 min | ppm | Raw gas variable |
| H2_60 | Exhaled hydrogen at 60 min | ppm | Raw gas variable |
| H2_90 | Exhaled hydrogen at 90 min | ppm | Raw gas variable |
| H2_120 | Exhaled hydrogen at 120 min | ppm | Raw gas variable |
| CH4_0 | Baseline exhaled methane | ppm | Measured at 0 min |
| CH4_30 | Exhaled methane at 30 min | ppm | Raw gas variable |
| CH4_60 | Exhaled methane at 60 min | ppm | Raw gas variable |
| CH4_90 | Exhaled methane at 90 min | ppm | Raw gas variable |
| CH4_120 | Exhaled methane at 120 min | ppm | Raw gas variable |
| Peak_H2_0_90 | Maximum hydrogen concentration observed from 0–90 min | ppm | Derived variable |
| Delta_H2_0_90 | Peak_H2_0_90 minus baseline H2_0 | ppm | Derived variable |
| Peak_CH4_0_120 | Maximum methane concentration observed from 0–120 min | ppm | Derived variable |
| H2_Positive | Hydrogen criterion met | True / False | Derived binary variable |
| CH4_Positive | Methane criterion met | True / False | Derived binary variable |
| SIBO criterion | Hydrogen increase ≥20 ppm above baseline within 90 min | Yes / No | Diagnostic threshold |
| IMO criterion | Methane concentration ≥10 ppm at any sampling time point | Yes / No | Diagnostic threshold |
| Negative phenotype | Neither SIBO nor IMO criterion met | Negative | Final classification group |
| Hydrogen-positive phenotype | SIBO criterion met and methane remained <10 ppm at all time points | Hydrogen-positive | Final classification group |
| Methane-positive phenotype | IMO criterion met and SIBO criterion not met | Methane-positive | Final classification group |
| Mixed-positive phenotype | Both SIBO and IMO criteria met | Mixed-positive | Final classification group |
| Overall_Positive | Any positive breath-test phenotype | True / False | Includes hydrogen-positive, methane-positive, and mixed-positive phenotypes |
| Severity_High | High bloating severity flag | 1 / 0 | 1 = bloating severity ≥7; 0 = bloating severity <7 |
| Technically valid test | Baseline sample present, successful lactulose ingestion, and all scheduled post-lactulose samples collected | Yes / No | Required for final analysis |
| Invalid test | Incomplete lactulose ingestion, vomiting, missing critical samples, or analyzer malfunction | Exclusion reason | Excluded from analysis |
Table 1: Variable definitions, diagnostic thresholds, and phenotype assignment rules. Definitions, coding schemes, units of measurement, derived variables, diagnostic thresholds, quality-control variables, and phenotype assignment criteria used for participant classification, dataset construction, and statistical analysis.
Pre-test Preparation
All participants received the same written and oral instructions before testing. Participants followed a restricted low-fermentation diet consisting of plain white rice, eggs, unseasoned chicken or fish, clear broth, water, and unsweetened, non-carbonated tea for 24 h before the test. Beans, whole grains, dairy products, fruits, fruit juices, onions, garlic, cabbage, alcohol, carbonated beverages, fiber supplements, and products containing sugar alcohols were prohibited during this period. Participants then underwent an overnight fast for 8–12 h before sample collection. On the morning of testing, smoking, chewing gum, vigorous exercise, and sleeping during the sampling period were not permitted. Before baseline breath collection, participants rinsed their mouths with plain water and remained seated for 10 min. Immediately before testing, clinical staff verified each participant's adherence to the 24 h dietary restrictions, 8–12 h overnight fast, and required medication washout protocols, as detailed in the study eligibility criteria, using a structured interview. Any medications that could not be safely interrupted were documented. These preanalytical controls were standardized to reduce background gas variability and improve comparability across participants8.
Lactulose Hydrogen–Methane Breath-Testing Procedure
Breath testing was performed in the morning with participants in a seated position using a digital breath analyzer capable of measuring exhaled hydrogen (H2), methane (CH₄), and carbon dioxide (CO2) concentrations. To ensure measurement accuracy, the analyzer was calibrated daily before testing using a standardized calibration gas mixture according to the manufacturer's instructions. Acceptable breath samples were verified using the device's built-in alveolar CO2 correction methodology, which automatically adjusts trace-gas concentrations expressed in parts per million (ppm) to account for potential room-air dilution during exhalation. All procedures were performed by trained clinical staff. The analyzer, calibration gas, sampling accessories, and lactulose substrate used in this study are listed in the Table of Materials.
A baseline end-expiratory breath sample was collected at 0 min. Immediately thereafter, each participant ingested 10 g of lactulose dissolved in 200 mL of room-temperature water within 2 min. Additional end-expiratory breath samples were collected at 30, 60, 90, and 120 min after lactulose ingestion. The 30 min sampling interval was selected to balance procedural feasibility and participant compliance within a routine outpatient clinical workflow. However, compared with the 15 min intervals recommended by some consensus guidelines, this wider sampling schedule represents a methodological limitation because it may fail to capture early or transient gas rises.
At each time point, participants inhaled normally, held their breath for 5 s, and then exhaled completely into the collection system to obtain an end-expiratory sample. Food intake, smoking, gum chewing, unnecessary walking, and sleeping were not permitted during the testing period. If coughing, interrupted exhalation, or obvious sample leakage occurred, the sample was recollected immediately.
The breath-testing timeline is shown in Figure 1. Raw H2 and CH4 values for all participants at each sampling time point are publicly available in the Zenodo repository (DOI: 10.5281/zenodo.20578413).
Breath-Test Interpretation and Phenotype Assignment
Breath-test interpretation criteria were predefined before clinical comparison. Small intestinal bacterial overgrowth (SIBO) was defined as an increase in exhaled H2 of at least 20 ppm above baseline within 90 min after lactulose ingestion. Intestinal methanogen overgrowth (IMO) was defined as a CH₄ concentration of at least 10 ppm at any time point during the test. Both definitions and diagnostic thresholds were applied in accordance with the North American Consensus guidelines. Participants were classified as hydrogen-positive when the H2 criterion for SIBO was met and CH₄ remained below 10 ppm at all recorded time points. Participants were classified as methane-positive when the IMO criterion was met and the hydrogen criterion for SIBO was not met. Participants were classified as mixed-positive when both the H2 criterion and the CH₄ criterion were met. Participants were classified as negative when neither criterion was met. These thresholds were applied uniformly across the entire cohort without post hoc modification. The classification rules used in the dataset are summarized in Table 114. Importantly, lactulose breath testing has recognized limitations. Because lactulose may accelerate orocecal transit and permit earlier colonic fermentation, false-positive breath-test results may occur in some individuals; therefore, breath-test positivity should be interpreted as a standardized phenotypic classification within the context of the present study rather than as definitive microbiologic confirmation of overgrowth.
Test Validity, Data Capture, and Quality Control
A breath test was considered technically valid only when all of the following conditions were met: availability of a baseline sample, successful lactulose ingestion, collection of all scheduled post-lactulose samples through 120 min, and absence of a major protocol deviation that would preclude interpretation. A test was excluded if lactulose ingestion was incomplete, vomiting occurred during the procedure, the participant withdrew before the 90 min sample, or device malfunction prevented reliable measurement. Raw gas values were entered directly into the study database as recorded, without interpolation, smoothing, or manual curve correction. Each participant occupied a single row in the analysis dataset, and each sampling time point had designated H2 and CH₄ data fields. Group assignment was generated strictly according to the predefined interpretation criteria and subsequently verified against the raw gas profile. Range checks were prespecified for key variables before database lock, and any out-of-range value required source verification. To support reproducibility, the de-identified study dataset and variable dictionary are publicly available in the Zenodo repository15.
Clinical Phenotypes and Statistical Analysis
Participants were classified into four phenotypic groups: negative, hydrogen-positive, methane-positive, and mixed-positive. The primary clinical outcome was bloating severity measured using a 0–10 numerical rating scale (NRS). Secondary variables included abdominal pain severity, symptom duration, stool frequency, constipation-related features, and bowel habit subtype. Constipation-related features were considered present if any of the following were documented during clinical assessment: fewer than three spontaneous bowel movements per week, straining, hard stools, or a sensation of incomplete evacuation. Continuous variables were summarized as mean ± standard deviation (SD) when approximately normally distributed and as median with interquartile range (IQR) when non-normally distributed. Categorical variables were summarized as counts and proportions.
The primary comparison contrasted participants with positive breath tests and those with negative breath tests. Secondary analyses compared the four phenotypic groups. For comparisons between two groups, continuous variables were analyzed using the independent-samples t-test or the Mann–Whitney U test, as appropriate. For comparisons among the four phenotypic groups, continuous variables were analyzed using one-way analysis of variance (ANOVA) or the Kruskal–Wallis test, as appropriate. Categorical variables were analyzed using the chi-square test or Fisher’s exact test. The normality of continuous variables was assessed using the Shapiro–Wilk test coupled with visual inspection of Q–Q plots. For comparisons among the four phenotype groups, statistical inference was based primarily on omnibus ANOVA or Kruskal–Wallis testing. Where appropriate, Bonferroni adjustment was considered to control for multiple comparisons. All statistical analyses were performed using SPSS Statistics version 27.0. All statistical tests were two-sided, and P < 0.05 was considered statistically significant. A noninvasive dual-gas protocol was used throughout because the objective of the study was reproducible outpatient phenotypic characterization within a standardized clinical workflow rather than invasive culture-based confirmation alone.