All experimental procedures were approved by the Kırşehir Ahi Evran University Animal Experiments Local Ethics Committee (approval decision no. 1, meeting no. 12, approval date: June 12, 2025) and were conducted in accordance with national and international guidelines for the care and use of laboratory animals. Measures were taken throughout the study to minimize pain and distress and to use the fewest animals necessary.
Preparation of chemicals
Methotrexate was used as a pretreatment agent to facilitate the establishment of the experimental methanol toxicity model. Because folate-dependent formate oxidation was more efficient in rats than in humans, methotrexate pretreatment was used to reduce formate clearance and increase susceptibility to methanol toxicity; it was used as a model-sensitizing intervention rather than as a surrogate for methanol exposure11,12. Methotrexate was supplied as a 500 mg/5 mL formulation, corresponding to a stock concentration of 100 mg/mL. The formulation was diluted with sterile 0.9% sodium chloride solution to obtain a final working concentration of 0.06 mg/mL. The working solution was administered by oral gavage at 5 mL/kg, corresponding to an MTX dose of 0.3 mg/kg. For rats weighing 200–220 g at study initiation, the daily administration volume ranged from 1.00 to 1.10 mL per animal and was calculated individually using the body weight recorded at study initiation. Body weight was not remeasured during the 7-day MTX pretreatment period. Methotrexate was administered once daily for 7 consecutive days (study days 1–7), and methanol was administered on study day 8 after completion of the MTX pretreatment protocol. This regimen was consistent with previously published oral-gavage MTX pretreatment models13.
Methanol (≥99.8% purity) was freshly prepared on the day of administration as a 20% (v/v) aqueous working solution by dilution with sterile distilled water. The working solution was prepared by mixing 1 volume of methanol with 4 volumes of sterile distilled water. In accordance with previously described methotrexate-pretreated rat models of methanol intoxication, a single dose of methanol was administered to Groups 3–5 on study day 8 at 3 g/kg by oral gavage. No food or water restrictions were imposed before methanol administration. The required administration volume was calculated individually based on each animal's body weight and was approximately 18.9 mL/kg for the 20% methanol solution. For a rat weighing approximately 220 g, this dose corresponded to 0.66 g of methanol and a final gavage volume of approximately 4.2 mL. This methanol exposure regimen was selected to maintain comparability with previously published methotrexate-pretreated rat models of acute methanol toxicity13,14,15.
The fomepizole working solution was prepared in sterile 0.9% sodium chloride solution at a final concentration of 10 mg/mL. An intraperitoneal loading dose of 15 mg/kg was administered 4 h after methanol administration, followed by intraperitoneal maintenance doses of 10 mg/kg at 12, 24, and 36 h. At the 10 mg/mL working concentration, the administration volumes were 1.5 mL/kg for the loading dose and 1.0 mL/kg for each maintenance dose. For a rat with a study-initiation body weight of approximately 220 g, these doses corresponded to approximately 0.33 mL for the loading dose and 0.22 mL for each maintenance dose. All administration volumes were calculated using the body weight recorded at study initiation. The fomepizole loading and maintenance doses were selected with reference to established methanol poisoning treatment recommendations1,6.
Ethanol was used as the antidotal comparator treatment. Absolute ethanol (≥99.8% purity) was diluted with sterile distilled water by mixing 1 volume of absolute ethanol with 4 volumes of sterile distilled water to obtain a final 20% (v/v) aqueous working solution. A single dose of ethanol was administered by oral gavage at 0.5 g/kg 4 h after methanol administration; no maintenance ethanol doses were administered. The administration volume was approximately 3.2 mL/kg. For a rat with a study-initiation body weight of approximately 220 g, this corresponded to a final gavage volume of approximately 0.70 mL. The administration volume was calculated using the body weight recorded at study initiation. The ethanol concentration, dose, route, and timing of administration were selected based on previously published methotrexate-pretreated rat models using ethanol as an antidotal comparator13,14.
All solutions were freshly prepared on the day of administration and were inspected for homogeneous appearance and the absence of visible particulate matter. Oral administrations were performed using a stainless-steel gavage cannula. During gavage, the cannula was carefully advanced from the oral cavity into the esophagus, and regurgitation, oral leakage, aspiration, and respiratory distress were avoided. Intraperitoneal injections were performed under aseptic conditions using sterile disposable syringes and needles. All procedures related to the preparation and administration of chemicals were conducted in accordance with institutional laboratory safety regulations.
Experimental animals, housing conditions, and randomization
A total of 30 adult male Wistar albino rats, aged 8–12 weeks and weighing 220 ± 20 g, were obtained from the Experimental Animal Research Laboratory of Ahi Evran University, Kırşehir, Türkiye. Wistar rats were selected because they had been widely used in experimental toxicity and nephroprotection studies and allowed comparison with previously published studies. The animals were housed at 24 ± 2 °C under a 12-h light/12-h dark cycle. Standard pellet chow and tap water were provided ad libitum throughout the 10-day experimental period. Before the experimental procedures, all animals underwent a 7-day acclimatization period.
Thirty rats were allocated to five experimental groups using a computer-assisted random allocation procedure, with a target of six animals per group. For each rat, a random integer between 1 and 5 was generated, and the animal was assigned to the corresponding experimental group. Once a group contained six animals, any subsequent draw identifying that group was discarded, and a new random number was generated until a group with an available position was selected. This procedure continued until all 30 rats had been allocated, resulting in 6 animals per group. The same researcher generated the random assignments and implemented allocation; no separate allocation operator was used. Group 1 (Control) received no experimental drug treatment, and animals underwent the same scheduled endpoint sampling as the other groups. Group 2 (MTX) received methotrexate by oral gavage at 0.3 mg/kg for 7 days. Group 3 (MTX + Methanol) received methotrexate for 7 days, followed by methanol at 3 g/kg on study day 8. Group 4 (MTX + Methanol + Fomepizole) received methotrexate pretreatment followed by methanol, with 4-methylpyrazole treatment initiated 4 h later. Group 5 (MTX + Methanol + Ethanol) received methotrexate pretreatment followed by methanol, with ethanol administered 4 h later.
All three methanol-exposed groups received the same MTX pretreatment and methanol administration protocol and differed only with respect to post-exposure antidotal treatment. The experimental group allocation, administration protocol, timing of antidotal treatment, and sample collection process were summarized in Figure 1. An a priori power analysis was performed for a fixed-effects one-way ANOVA with five independent groups. Assuming a large standardized effect size (Cohen’s f = 0.70), a significance level of 0.05, and 80% statistical power, the minimum required total sample size was calculated as 30 animals, corresponding to six animals per group. The calculated power for a total sample size of 30 was approximately 80.9%. The assumed effect size (Cohen’s f = 0.70) was specified before the experiment based on the investigators’ expectation of a large overall between-group effect in this acute toxicity model. This assumption was based on the investigator's judgment rather than an estimate derived from pilot data or a specific previous study. No single primary outcome was prospectively designated for this study; the sample size calculation was based on an assumed large overall effect in an omnibus comparison among the five experimental groups. A primary outcome cannot be retrospectively designated as a prospectively specified endpoint. Accordingly, the sample size calculation does not provide adequate power for each individual outcome or for pairwise comparisons.
Methanol intoxication and antidotal treatment protocol
After the acclimatization period, animals in Groups 2–5 received methotrexate once daily for 7 consecutive days (study days 1–7). On study day 8, animals in Groups 3–5 received a single dose of 20% methanol solution at 3 g/kg by oral gavage. No fasting or other food or water restrictions were imposed before methanol administration.
In the MTX + Methanol + Fomepizole group, an intraperitoneal loading dose of 15 mg/kg was administered 4 h after methanol administration, followed by intraperitoneal maintenance doses of 10 mg/kg at 12, 24, and 36 h after methanol administration. In the MTX + Methanol + Ethanol group, a single dose of ethanol was administered by oral gavage at 0.5 g/kg 4 h after methanol administration; no maintenance ethanol doses were administered. The two antidotal regimens were selected to reflect established fomepizole dosing recommendations and previously published ethanol comparator protocols1,6,13,14. The regimens were not designed to provide dose-, route-, or exposure-matched treatment. Therefore, the repeated intraperitoneal fomepizole regimen and the single oral ethanol dose constituted an unequal pharmacologic comparison. Successful gavage administration was confirmed by the absence of regurgitation, oral leakage, or respiratory distress during the procedure. Successful intraperitoneal administration was confirmed by the absence of leakage, bleeding, or marked swelling at the injection site.
After administration, the animals were regularly monitored for general health status, mobility, food intake, posture, fur appearance, and signs of toxicity. The treatment schedule was designed to allow initiation of toxic metabolite formation from methanol while enabling evaluation of the protective and therapeutic effects of the antidotal agents.
Euthanasia, humane endpoints, and sample collection
Throughout the experiment, all animals were evaluated daily for general health status, food and water intake, mobility, and behavioral changes. Humane endpoint criteria were predefined as marked lethargy, inability to consume food or water, severe weight loss, restricted mobility, abnormal posture, persistent piloerection, or evident signs of distress. Animals meeting any of these criteria were planned to undergo humane euthanasia. However, no animal reached the predefined humane endpoint criteria during the study.
All animals in the five experimental groups were euthanized on study day 10. For the MTX + Methanol, MTX + Methanol + Fomepizole, and MTX + Methanol + Ethanol groups, this endpoint corresponded to 48 h after the single methanol administration on study day 8. The Control group remained untreated until study day 10, whereas the MTX-only group was monitored until study day 10 after completion of the 7-day MTX administration protocol. Thus, all five groups had the same total study duration and underwent euthanasia and sample collection on the same study day.
Ketamine and xylazine were used to induce deep anesthesia. The depth of anesthesia was confirmed by loss of the pedal withdrawal reflex. After deep anesthesia was achieved, blood samples were collected by intracardiac puncture. Approximately 3–5 mL of blood was obtained using an appropriate syringe and needle. Blood collected for measurement of serum urea and creatinine concentrations, serum SOD activity, and serum MDA concentration was transferred into anticoagulant-free tubes and allowed to clot completely. Blood intended for measurement of GSH level and CAT activity was collected separately into tubes containing ethylenediaminetetraacetic acid (EDTA) and was processed without a clotting step. After complete clot formation, serum samples were centrifuged at 3,000 × g for 10–15 min at 4 °C. The separated serum was stored at −80 °C until analysis. Successful serum separation was confirmed by a clear, non-hemolyzed appearance. After blood collection, euthanasia was completed by exsanguination under deep anesthesia. A median laparotomy was then performed, and both kidneys were carefully removed. After the surrounding fat and connective tissues were removed, the kidneys were rinsed with cold physiological saline. Tissue samples were divided for histopathological and biochemical analyses. Samples allocated for histopathological examination were placed in 10% neutral-buffered formaldehyde. Samples allocated for biochemical analyses were appropriately labeled and stored at −80 °C.
Sample collection, biochemical analyses, and outcome assessments were performed by researchers blinded to the experimental groups. No animals were excluded from the analyses.
Biochemical analyses
Serum urea concentration was measured using an enzymatic urease–glutamate dehydrogenase kinetic assay on an automated biochemistry analyzer. Urea was hydrolyzed by urease to produce ammonia, which subsequently reacted with 2-oxoglutarate and reduced nicotinamide adenine dinucleotide (NADH) in the presence of glutamate dehydrogenase. The decrease in absorbance resulting from NADH consumption was measured kinetically. Serum creatinine concentration was measured colorimetrically using the same automated biochemistry analyzer.
Serum superoxide dismutase (SOD) activity was determined using a colorimetric assay based on superoxide radical generation by the xanthine–xanthine oxidase system and its reaction with 2-(4-iodophenyl)-3-(4-nitrophenyl)-5-phenyltetrazolium chloride to form a colored formazan product. Endpoint absorbance was measured at 505 nm. Serum malondialdehyde (MDA) concentration was determined using the thiobarbituric acid reaction. Serum samples were mixed with cold trichloroacetic acid to precipitate proteins and were centrifuged at 7,500 × g for 5 min at 4 °C. The resulting supernatant was mixed with an equal volume of thiobarbituric acid and incubated at 90 °C for 60 min. The reaction tubes were then cooled in a cold-water bath for 10 min, and absorbance was measured at 532 nm. MDA concentrations were calculated from the corresponding calibration curve. Reduced glutathione (GSH) was measured in EDTA-anticoagulated blood using a modified Ellman method. Following protein precipitation with trichloroacetic acid, the deproteinized samples were reacted with 5,5′-dithiobis(2-nitrobenzoic acid) in 500 mM Tris buffer at pH 8.2, and absorbance was measured at 412 nm. Catalase (CAT) activity was measured in EDTA-anticoagulated blood using a two-step colorimetric assay. Samples were incubated with a known amount of hydrogen peroxide, and after the enzymatic reaction was terminated, residual hydrogen peroxide was measured using a chromogenic reagent at 405 nm.
Because SOD activity and MDA concentration were measured in serum, and GSH level and CAT activity were measured in EDTA-anticoagulated blood rather than kidney tissue homogenates, normalization of these redox-related parameters to tissue total protein concentration was not applicable. For interpretation of the redox-related biomarker profile, higher serum MDA concentrations were considered consistent with greater lipid peroxidation, whereas lower serum SOD activity, blood GSH levels, and blood CAT activity were considered indicative of reduced antioxidant capacity; changes in the opposite direction were interpreted as a more favorable redox-related profile.
For renal tissue enzyme-linked immunosorbent assay (ELISA) measurements, approximately 50 mg of kidney tissue stored at −80 °C was homogenized on ice in 500 µL of homogenization buffer containing a protease inhibitor cocktail, corresponding to a fixed tissue-to-buffer ratio of 1:10 (w/v). One animal-specific renal tissue homogenate was prepared for each rat. Samples from different animals were processed independently and were not pooled at any stage. The homogenates were centrifuged at 14,000 × g for 10 min at 4 °C, and the supernatant obtained from each animal was collected separately and divided into aliquots for the planned renal tissue analyses. Total protein concentration was not measured separately; therefore, tissue ELISA results were not normalized to it. Final concentrations calculated from the corresponding assay-specific standard curves were expressed as ng/L for TNF-α and IL-6 and as ng/mL for IL-1β, KIM-1, and cystatin C.
Kidney injury molecule-1 (KIM-1) and cystatin C were evaluated as renal injury biomarkers, whereas tumor necrosis factor-α (TNF-α), interleukin-6 (IL-6), and interleukin-1β (IL-1β) were evaluated as renal inflammatory markers. All five analytes were measured in kidney tissue homogenates using rat-specific ELISA kits according to the manufacturers’ protocols. For the respective assays, the analytical sensitivities and measurement ranges were 2.51 ng/L and 5–1,000 ng/L for TNF-α, 0.052 ng/L and 0.1–40 ng/L for IL-6, 0.08 ng/mL and 0.2–60 ng/mL for IL-1β, 0.01 ng/mL and 0.05–10 ng/mL for KIM-1, and 0.25 ng/mL and 0.5–100 ng/mL for cystatin C, respectively. Before analysis, all reagents, standards, and renal tissue supernatants were brought to room temperature. Standard curves were generated separately for each assay run according to the manufacturer’s recommendations. Standards and renal tissue supernatants were added to antibody-precoated wells, followed by the corresponding biotinylated detection antibody and streptavidin-horseradish peroxidase conjugate. Samples and ELISA reagents were incubated for 1 h at 37 °C. After five washing cycles using an automated microplate washer, substrate solutions A and B were added and incubated for 10 min at 37 °C. The color reaction was terminated using an acidic stop solution, and absorbance was measured at 450 nm. For each analyte, blank-corrected absorbance values were converted to concentrations using the corresponding assay-specific standard curve.
All biochemical analyses were performed under standardized conditions, and all samples were processed using the same procedures. Renal tissue ELISA measurements were performed in duplicate. For each analyte, the mean of the two technical replicate wells was calculated to obtain a single animal-level value. Technical replicate wells and separate aliquots obtained from the same animal-specific homogenate were not considered independent observations. The individual animal was considered the experimental unit, and one animal-level result for each parameter was included in the statistical analysis.
Histopathological processing and renal injury scoring
Tissue samples were processed for microscopic evaluation using standard histopathological procedures. Kidney tissues were fixed in 10% neutral-buffered formaldehyde at room temperature for 72 h. After fixation, the tissues were dehydrated through graded ethanol concentrations of 50%, 70%, 80%, 96%, and 100%, with each concentration maintained for 1 h. Subsequently, the tissues were cleared using a two-step xylene procedure and embedded in paraffin blocks. Sections 5 µm thick were obtained from the paraffin blocks using a rotary microtome.
For hematoxylin and eosin staining, sections were deparaffinized and rehydrated, stained with hematoxylin for 5 min, and washed under running tap water for 5 min. Differentiation was performed using acid alcohol, after which the sections were maintained in ammonia water for 1 min. The sections were then counterstained with eosin for 2 min. Subsequently, the sections were dehydrated through an ascending alcohol series, cleared in xylene, and mounted with an appropriate mounting medium.
For Masson’s trichrome staining, sections were deparaffinized and rehydrated, then incubated in a mordant solution at 56 °C for 60 min and washed under running water for 10 min. The sections were then sequentially treated with Weigert’s iron hematoxylin for 10 min, Biebrich scarlet-acid fuchsin for 15 min, phosphotungstic acid for 10 min, and aniline blue for 10 min. Finally, the sections were maintained in 1% acetic acid for 5 min, dehydrated, cleared in xylene, and mounted.
Successful staining was confirmed by clear nuclear staining, preserved cytoplasmic contrast, maintenance of renal architecture, and distinct visualization of connective tissue structures. All stained slides were evaluated under standardized conditions using a light microscope equipped with a digital imaging system.
Histopathological evaluations were performed by a single experienced pathologist who was blinded to the experimental groups. Histopathological scoring was performed at 200× magnification. For each animal and each histopathological parameter, 10 randomly selected microscopic fields were examined. The field showing the most severe alteration for the parameter under evaluation was used to assign the animal’s single integer score on the 0–4 scale. Tubular injury was evaluated according to tubular dilatation, accumulation of proteinaceous material in the tubular lumen, tubular epithelial degeneration, and tubular necrosis. Glomerular injury was evaluated according to glomerular degeneration or atrophy, enlargement of Bowman’s space, and vascular congestion. Interstitial injury was evaluated based on interstitial inflammation and fibrosis. Five-micrometer hematoxylin and eosin- and Masson’s trichrome-stained kidney sections from each animal were used for histopathological evaluation. Representative photomicrographs were obtained at 200× magnification, with scale bars representing 100 µm. The number of separate histological sections examined per animal could not be recovered from the study records and therefore cannot be reported.
Masson’s trichrome findings were interpreted histomorphologically, considering the localization and morphological pattern of collagen deposition rather than the blue staining intensity alone. The semiquantitative interstitial fibrosis score was based on this histomorphological assessment, and the percentage of collagen-positive area was not quantified. Histopathological scoring was performed semiquantitatively using previously described renal injury assessment criteria16,17. Each animal was assigned one integer score for each histopathological parameter on a scale of 0–4, where 0 = absent, 1 = minimal, 2 = mild, 3 = moderate, and 4 = severe. The grading categories represented the blinded pathologist’s overall assessment of the morphological severity of each lesion rather than a continuous morphometric measurement.
Safety precautions and waste management
Appropriate personal protective equipment was used when handling methanol, formaldehyde, xylene, biological samples, and animal tissues. Laboratory coats, gloves, and eye protection were worn. Because of methanol's systemic toxicity and volatility, all procedures were performed with caution. Procedures involving formaldehyde and xylene were conducted under a chemical fume hood whenever possible. Sharps were collected in appropriate sharps disposal containers. Chemical waste and biological materials were disposed of in accordance with institutional biosafety and hazardous waste management procedures.
Statistical analysis
Continuous biochemical, renal injury biomarker, inflammatory, renal function, and redox-related variables were expressed as mean ± standard deviation (mean ± SD). Normality of the data distribution was assessed using the Shapiro–Wilk test, and homogeneity of variances was evaluated using Levene’s test. Between-group comparisons for biochemical outcomes were performed using one-way analysis of variance (ANOVA). Assumption checks identified departures from normality in one group for serum creatinine and variance heterogeneity for several biochemical outcomes. The original ANOVA approach was retained; however, these departures might have affected the reliability of the resulting p-values, and the findings were therefore interpreted cautiously.
When a statistically significant difference was detected by ANOVA, pairwise comparisons between groups were performed using Duncan’s post hoc multiple-comparison test. Values sharing the same superscript letter within each row were not significantly different according to Duncan’s post hoc test. No additional multiplicity adjustment was applied across the biochemical outcomes. Duncan’s procedure did not provide strong control of the family-wise type I error rate, and testing multiple outcomes further increased the risk of false-positive findings. Therefore, individual significant comparisons were interpreted cautiously.
Overall effect sizes for biochemical outcomes were estimated using eta-squared (η2), calculated as (F × df_between)/(F × df_between + df_error), with df_between = 4 and df_error = 25. Two-sided 95% confidence intervals were calculated by inverting the noncentral F distribution and transforming the noncentrality limits (λ) using λ/(λ + N), where N = 30. These supplementary calculations were performed using a scientific computing environment. Estimates were derived from the rounded F statistics obtained from the primary statistical analysis and were therefore approximate. The confidence intervals relied on the normality and equal-variance assumptions of the ANOVA model and were not adjusted for multiple outcomes.
Histopathological scores were ordinal, semiquantitative observations, summarized descriptively as mean ± SD to show the average group-level lesion burden and between-animal variability. No inferential hypothesis testing or post hoc pairwise comparisons were performed for the histopathological scores. Therefore, ANOVA, Duncan’s post hoc test, and p-value reporting were applied only to biochemical, renal injury biomarker, inflammatory, renal function, and redox-related outcomes. A p-value < 0.05 was considered statistically significant.