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JoVE Journal Cancer Research
Kernisolierung aus frischen gefrorenen Hirntumoren für Einzelkern-RNA-seq und ATAC-seq
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Kernisolierung aus frischen gefrorenen Hirntumoren für Einzelkern-RNA-seq und ATAC-seq

Article DOI: 10.3791/61542-v • 06:22 min • August 25th, 2020
August 25th, 2020 •
1, 2, 1, 1,3, 4, 2, 1
1Neurology Clinic and National Center for Tumor Diseases, University Hospital Heidelberg, 2Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ), 3Clinical Cooperation Unit Neurooncology, German Cancer Research Center (DKFZ), 4Division of Experimental Neurosurgery, Department of Neurosurgery, University of Heidelberg, INF 400, Heidelberg, Germany

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Intratumorale Heterogenität ist ein inhärentes Merkmal von Tumoren, einschließlich Gliomen. Wir haben ein einfaches und effizientes Protokoll entwickelt, das eine Kombination aus Puffern und Gradientenzentrifugation verwendet, um einzelne Kerne aus frischem gefrorenem Gliomgewebe für Einzelkern-RNA- und ATAC-Sequenzierungsstudien zu isolieren.

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Cancer Research Nuclei isolation snRNA-seq snATAC-seq 10x Genomics Gliom
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