Ken R. Duffy

Publications

• Evidentiary Evaluation of Single Cells Renders Highly Informative Forensic Comparisons Across Multifarious Admixtures
  Forensic Science International. Genetics. Mar, 2023  |   Pubmed ID: 36934551
• Author Correction: Replicative History Marks Transcriptional and Functional Disparity in the CD8 T Cell Memory Pool
  Nature Immunology. Jul, 2022  |   Pubmed ID: 35606445
• Replicative History Marks Transcriptional and Functional Disparity in the CD8 T Cell Memory Pool
  Nature Immunology. May, 2022  |   Pubmed ID: 35393592
• Corrigendum to "The a Posteriori Probability of the Number of Contributors when Conditioned on an Assumed Contributor" [Forensic Sci. Int. Genet. 54 (2021) 102563]
  Forensic Science International. Genetics. May, 2022  |   Pubmed ID: 35168909
• High-quality Data from a Forensically Relevant Single-cell Pipeline Enabled by Low PBS and Proteinase K Concentrations
  Journal of Forensic Sciences. Mar, 2022  |   Pubmed ID: 34936089
• Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance
  Frontiers in Bioinformatics. 2021  |   Pubmed ID: 36303793
• The a Posteriori Probability of the Number of Contributors when Conditioned on an Assumed Contributor
  Forensic Science International. Genetics. Sep, 2021  |   Pubmed ID: 34284325
• HSPCs Display Within-family Homogeneity in Differentiation and Proliferation Despite Population Heterogeneity
  ELife. May, 2021  |   Pubmed ID: 34002698
• Towards Developing Forensically Relevant Single-cell Pipelines by Incorporating Direct-to-PCR Extraction: Compatibility, Signal Quality, and Allele Detection
  International Journal of Legal Medicine. May, 2021  |   Pubmed ID: 33484330
• Manipulating Niche Composition Limits Damage to Haematopoietic Stem Cells During Plasmodium Infection
  Nature Cell Biology. Dec, 2020  |   Pubmed ID: 33230302
• A Large-scale Validation of NOCIt's a Posteriori Probability of the Number of Contributors and Its Integration into Forensic Interpretation Pipelines
  Forensic Science International. Genetics. Jul, 2020  |   Pubmed ID: 32339916
• Sample Path Properties of the Average Generation of a Bellman-Harris Process
  Journal of Mathematical Biology. Jul, 2019  |   Pubmed ID: 31069504
• Stochastically Timed Competition Between Division and Differentiation Fates Regulates the Transition From B Lymphoblast to Plasma Cell
  Frontiers in Immunology. 2018  |   Pubmed ID: 30250473
• Multiplexed Division Tracking Dyes for Proliferation-Based Clonal Lineage Tracing
  Journal of Immunology (Baltimore, Md. : 1950). Aug, 2018  |   Pubmed ID: 29914887
• Proliferation Dynamics of Acute Myeloid Leukaemia and Haematopoietic Progenitors Competing for Bone Marrow Space
  Nature Communications. Feb, 2018  |   Pubmed ID: 29410432
• A Large-scale Dataset of Single and Mixed-source Short Tandem Repeat Profiles to Inform Human Identification Strategies: PROVEDIt
  Forensic Science International. Genetics. Jan, 2018  |   Pubmed ID: 29091906
• Production of High-fidelity Electropherograms Results in Improved and Consistent DNA Interpretation: Standardizing the Forensic Validation Process
  Forensic Science International. Genetics. Nov, 2017  |   Pubmed ID: 28950155
• Exploring STR Signal in the Single- and Multicopy Number Regimes: Deductions from an in Silico Model of the Entire DNA Laboratory Process
  Electrophoresis. Mar, 2017  |   Pubmed ID: 27981603
• Retracing the in Vivo Haematopoietic Tree Using Single-cell Methods
  FEBS Letters. Nov, 2016  |   Pubmed ID: 27404207
• Site-specific Recombinatorics: in Situ Cellular Barcoding with the Cre Lox System
  BMC Systems Biology. Jun, 2016  |   Pubmed ID: 27363727
• Inferring Average Generation Via Division-linked Labeling
  Journal of Mathematical Biology. Aug, 2016  |   Pubmed ID: 26733310
• The Branching Point in Erythro-Myeloid Differentiation
  Cell. Dec, 2015  |   Pubmed ID: 26687356