Sander Granneman Centre for Engineering Biology University of Edinburgh Biography Publications Institution JoVE Articles Sander Granneman has not added a biography. If you are Sander Granneman and would like to personalize this page please email our Author Liaison for assistance. Publications Hfq CLASH Uncovers SRNA-target Interaction Networks Linked to Nutrient Availability Adaptation ELife. May, 2020 | Pubmed ID: 32356726 Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges Methods in Molecular Biology (Clifton, N.J.). 2019 | Pubmed ID: 31602614 Purification of Cross-linked RNA-protein Complexes by Phenol-toluol Extraction Nature Communications. 03, 2019 | Pubmed ID: 30824702 High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of CDNA (CRAC) Methods in Molecular Biology (Clifton, N.J.). 2018 | Pubmed ID: 29484598 An RNA-dependent Mechanism for Transient Expression of Bacterial Translocation Filaments Nucleic Acids Research. 04, 2018 | Pubmed ID: 29432565 Maturation of the 90S Pre-ribosome Requires Mrd1 Dependent U3 SnoRNA and 35S Pre-rRNA Structural Rearrangements Nucleic Acids Research. 04, 2018 | Pubmed ID: 29373706 RNA-binding Activity of TRIM25 is Mediated by Its PRY/SPRY Domain and is Required for Ubiquitination BMC Biology. 11, 2017 | Pubmed ID: 29117863 High-throughput RNA Structure Probing Reveals Critical Folding Events During Early 60S Ribosome Assembly in Yeast Nature Communications. 09, 2017 | Pubmed ID: 28959008 Specialized Box C/D SnoRNPs Act As Antisense Guides to Target RNA Base Acetylation PLoS Genetics. May, 2017 | Pubmed ID: 28542199 Kinetic CRAC Uncovers a Role for Nab3 in Determining Gene Expression Profiles During Stress Nature Communications. 04, 2017 | Pubmed ID: 28400552 Robust Statistical Modeling Improves Sensitivity of High-throughput RNA Structure Probing Experiments Nature Methods. 01, 2017 | Pubmed ID: 27819660 The Nrd1-like Protein Seb1 Coordinates Cotranscriptional 3' End Processing and Polyadenylation Site Selection Genes & Development. 07, 2016 | Pubmed ID: 27401558 Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough PLoS Genetics. Dec, 2015 | Pubmed ID: 26694144 Transcriptome-wide RNA Processing Kinetics Revealed Using Extremely Short 4tU Labeling Genome Biology. Dec, 2015 | Pubmed ID: 26679539 Cell Populations Can Use Aneuploidy to Survive Telomerase Insufficiency Nature Communications. Oct, 2015 | Pubmed ID: 26489519 A Network of Assembly Factors is Involved in Remodeling RRNA Elements During Preribosome Maturation The Journal of Cell Biology. Jul, 2015 | Pubmed ID: 26150393 The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot PLoS Biology. Feb, 2015 | Pubmed ID: 25710520 A Network of Assembly Factors is Involved in Remodeling RRNA Elements During Preribosome Maturation The Journal of Cell Biology. Nov, 2014 | Pubmed ID: 25404745 Rio1 Mediates ATP-dependent Final Maturation of 40S Ribosomal Subunits Nucleic Acids Research. Oct, 2014 | Pubmed ID: 25294836 Snapshots of Pre-rRNA Structural Flexibility Reveal Eukaryotic 40S Assembly Dynamics at Nucleotide Resolution Nucleic Acids Research. Oct, 2014 | Pubmed ID: 25200078 Identification of Bacteriophage-encoded Anti-sRNAs in Pathogenic Escherichia Coli Molecular Cell. Jul, 2014 | Pubmed ID: 24910100 PAR-CLIP Data Indicate That Nrd1-Nab3-dependent Transcription Termination Regulates Expression of Hundreds of Protein Coding Genes in Yeast Genome Biology. Jan, 2014 | Pubmed ID: 24393166 Coupled GTPase and Remodelling ATPase Activities Form a Checkpoint for Ribosome Export Nature. Jan, 2014 | Pubmed ID: 24240281 Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly Molecular Cell. Dec, 2013 | Pubmed ID: 24239293 Spliceosome-mediated Decay (SMD) Regulates Expression of Nonintronic Genes in Budding Yeast Genes & Development. Sep, 2013 | Pubmed ID: 24065768 Multiple RNA Interactions Position Mrd1 at the Site of the Small Subunit Pseudoknot Within the 90S Pre-ribosome Nucleic Acids Research. Jan, 2013 | Pubmed ID: 23193268 Structure of the Pre-60S Ribosomal Subunit with Nuclear Export Factor Arx1 Bound at the Exit Tunnel Nature Structural & Molecular Biology. Dec, 2012 | Pubmed ID: 23142978 Proofreading of Pre-40S Ribosome Maturation by a Translation Initiation Factor and 60S Subunits Nature Structural & Molecular Biology. Aug, 2012 | Pubmed ID: 22751017 A Cluster of Ribosome Synthesis Factors Regulate Pre-rRNA Folding and 5.8S RRNA Maturation by the Rat1 Exonuclease The EMBO Journal. Aug, 2011 | Pubmed ID: 21811236 Cross-linking, Ligation, and Sequencing of Hybrids Reveals RNA-RNA Interactions in Yeast Proceedings of the National Academy of Sciences of the United States of America. Jun, 2011 | Pubmed ID: 21610164 Box C/D SnoRNP Catalysed Methylation is Aided by Additional Pre-rRNA Base-pairing The EMBO Journal. May, 2011 | Pubmed ID: 21556049 The Nuclear RNA Polymerase II Surveillance System Targets Polymerase III Transcripts The EMBO Journal. May, 2011 | Pubmed ID: 21460797 Cracking Pre-40S Ribosomal Subunit Structure by Systematic Analyses of RNA-protein Cross-linking The EMBO Journal. Jun, 2010 | Pubmed ID: 20453830 Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis Molecular Cell. Nov, 2009 | Pubmed ID: 19941819 Identification of Protein Binding Sites on U3 SnoRNA and Pre-rRNA by UV Cross-linking and High-throughput Analysis of CDNAs Proceedings of the National Academy of Sciences of the United States of America. Jun, 2009 | Pubmed ID: 19482942 Building Ribosomes: Even More Expensive Than Expected? Current Biology : CB. Jun, 2007 | Pubmed ID: 17550767 Surveillance de la dynamique d’interaction protéine-ARN in vivo à haute résolution temporelle à l’aide de χCRAC Stuart W. McKellar1, Ivayla Ivanova1, Robert W. van Nues2, Ross A. Cordiner3, Mehak Chauhan1, Niki Christopoulou1, Will Worboys4, Andrew Langford4, Torben Heick Jensen3, Sander Granneman1 1Centre for Engineering Biology, University of Edinburgh, 2Institute of Cell Biology, University of Edinburgh, 3Department of Molecular Biology and Genetics, Aarhus University, 4UVO3 Ltd. JoVE 61027 Biochemistry
Surveillance de la dynamique d’interaction protéine-ARN in vivo à haute résolution temporelle à l’aide de χCRAC Stuart W. McKellar1, Ivayla Ivanova1, Robert W. van Nues2, Ross A. Cordiner3, Mehak Chauhan1, Niki Christopoulou1, Will Worboys4, Andrew Langford4, Torben Heick Jensen3, Sander Granneman1 1Centre for Engineering Biology, University of Edinburgh, 2Institute of Cell Biology, University of Edinburgh, 3Department of Molecular Biology and Genetics, Aarhus University, 4UVO3 Ltd. JoVE 61027 Biochemistry