Name: protein folding levels and bonds
Uploaded: 2023-04-30T10:34:07.000Z
Duration: 1 min 24 s
Channel: JoVE

K12 Standards

Next Generation Science Standards

High School

Life Science

from-molecules-to-organisms-structures-and-processes

From Molecules to Organisms: Structures and Processes

HS-LS1-1

Protein Organization

أثناء الترجمة ، تشكل سلسلة من الأحماض الأمينية الخارجة من الريبوسوم بنية البروتين الأساسية. يتم تثبيت سلسلة الببتيد هذه معا بواسطة روابط تساهمية بين نهايات أمينية وكربوكسيل للأحماض الأمينية.
تصنع بعض الأحماض الأمينية روابط هيدروجينية مع جيرانها لتشكيل هياكل ثانوية مستقرة مثل حلزونات ألفا وألواح بيتا.
حلزونات ألفا عبارة عن هياكل حلزونية مرتبطة ببعضها البعض بواسطة روابط هيدروجينية بين أكسجين الكربونيل وهيدروجين أميد لكل بقايا رابعة من الأحماض الأمينية لسلسلة عديد الببتيد.
صفائح بيتا عبارة عن هياكل عديد ببتيد متعرجة تتشكل عندما تتفاعل أجزاء من سلسلة عديد الببتيد بشكل جانبي من خلال الترابط الهيدروجيني.
تساعد التفاعلات الكيميائية الإضافية بين السلاسل الجانبية البعيدة للأحماض الأمينية أو العمود الفقري للببتيد ، مثل القوى الكارهة للماء ، والترابط الأيوني ، وجسور ثاني كبريتيد ، على طي عديد الببتيد في الهيكل الثلاثي. هذا الشكل ثلاثي الأبعاد هو الشكل الوظيفي النهائي للعديد من البروتينات.
إذا اجتمعت سلسلتان أو أكثر من سلاسل عديد الببتيد من الهيكل الثلاثي إلى مجمع أكبر ، يتم إنشاء هيكل رباعي. يمكن أن تكون هذه مجمعات متجانسة أو غير متجانسة ذات وظائف خلوية متميزة.

<ol>
	<li>Sanvictores T ، Farci F. الكيمياء الحيوية ، هيكل البروتين الأساسي. [تم التحديث في عام 2021 في 5 نوفمبر]. في: StatPearls [الإنترنت]. جزيرة الكنز (فلوريدا): StatPearls للنشر. 2022 يناير-. متاح من: <a href="https://www.ncbi.nlm.nih.gov/books/NBK564343/">https://www.ncbi.nlm.nih.gov/books/NBK564343/</a></li>
	<li>أبو عليا ، محمد ، ليان شرودر ، ميغان جارسيا ، باتريك إل دوبنماير ، دونالد جيه وينك ، وجينيفرا أ. كلارك. "ربط بنية البروتين بالتفاعلات بين الجزيئات: مختبر النمذجة الحاسوبية". مجلة التربية الكيميائية 93 ، العدد 8 (2016): 1353-1363.</li>
</ol>

تنظيم البروتين

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البروتينات هي بوليمرات من بقايا الأحماض الأمينية. فهي متعددة الاستخدامات ومسؤولة عن وظائف خلوية مختلفة، بما في ذلك تكرار الحمض النووي، والنقل الجزيئي، والتحفيز، والدعم الهيكلي. تحتوي البروتينات على بنية هرمية تشتمل على ثلاثة مستويات على الأقل من التنظيم: البنية الأولية والثانوية والثالثية. تحتوي بعض البروتينات الكبيرة على بنية رباعية حيث ترتبط وحدات البروتين الفردية ببعضها البعض.

الهيكل الأساسي للبروتين هو تسلسل الأحماض الأمينية. ترتبط الأحماض الأمينية من خلال روابط الببتيد لتكوين سلسلة متعدد ببتيد ذات طرفين: النهاية الأمينية (النهاية N) والنهاية الكربوكسيلية (النهاية C). يحدد تسلسل الأحماض الأمينية الشكل المطوي النهائي للبروتين. يتم ترتيب عشرين من الأحماض الأمينية المختلفة في تسلسلات مختلفة لتكوين مجموعة متنوعة من الببتيدات.

يشير الهيكل الثانوي إلى المناطق المطوية محليًا من سلاسل الأحماض الأمينية التي يتم تثبيتها بواسطة روابط الهيدروجين. هناك نوعان من الهياكل الثانوية: حلزونات ألفا وصفائح بيتا المطوية. ترتبط هذه العناصر الهيكلية الثانوية بحلقات بسيطة.

ومع تجميع الهياكل الثانوية بشكل أكبر، يتم إنشاء الشكل المطوي النهائي للبروتين. يتم تثبيت مثل هذا الهيكل ثلاثي الأبعاد أو الثلاثي للبروتين من خلال التفاعلات بين السلاسل الجانبية للأحماض الأمينية. تعمل الروابط الهيدروجينية، والقوى الكهروستاتيكية، وروابط ثاني كبريتيد، وقوى فاندر فالس على تثبيت الشكل المطوي، والذي غالبًا ما يكون الحالة الأصلية أو الوظيفية للبروتين.

عندما تشكل سلسلتان أو أكثر من سلاسل البولي ببتيد المطوية التي تسمى وحدات فرعية من البروتين مركبًا، يتم إنشاء بنية بروتينية رباعية.

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البروتينات عبارة عن بوليمرات من بقايا الأحماض الأمينية. فهي متعددة الاستخدامات ومسؤولة عن الوظائف الخلوية المختلفة ، بما في ذلك تكرار الحمض النووي ، والجزيئات ...

Education

JoVE Core

Cell Biology

بيولوجيا الخلية

Unit 1

الوحدة الأولى

Protein Structure

بنية البروتين

KEY TERMS AND CONCEPTS

المصطلحات والمفاهيم الأساسية

protein folding levels and bonds

Proteins are built from amino acids and folded into shapes that support many cell jobs. They help with DNA replication, molecular transport, catalysis, and structural support. Their function depends on how their amino acids are arranged and folded.

Protein structure is organized in levels. The primary structure is the amino acid sequence in a polypeptide chain. Amino acids are joined by peptide bonds, and the chain has two ends: the amino terminus, or N-terminus, and the carboxyl terminus, or C-terminus. Twenty different amino acids can be arranged in many sequences to make a wide variety of polypeptides.

The secondary structure forms when parts of the chain fold locally. These regions are stabilized by hydrogen bonds. The two main secondary structures are alpha-helices and beta-pleated sheets. Simple loops connect these folded sections.

The tertiary structure is the full three-dimensional fold of one polypeptide chain. It is stabilized by interactions between amino acid side chains. Hydrogen bonds, electrostatic forces, disulfide linkages, and Vander Waals forces help hold the folded protein in its native, functional state.

Some proteins form a quaternary structure. This happens when two or more folded polypeptide chains, called protein subunits, join together into one complex. Large proteins can use this higher level of organization to work as a unit.

Protein Folding Levels and Bonds

what are proteins?

Protein Building Blocks and Folding

Proteins are built from amino acids linked by peptide bonds. Long chains of amino acids are often called polypeptides, and the terms proteins and polypeptides are sometimes used the same way. In this context, polypeptides with a molecular weight below 10,000 daltons are called polypeptides, while proteins have a higher molecular weight. Very short chains with fewer than 20 amino acids are called peptides or oligopeptides. Amino acids are the basic units of proteins. Each amino acid has a...

protein organization

Proteins are built from amino acids and folded into shapes that support many cell jobs. They help with DNA replication, molecular transport, catalysis, and structural support. Their function depends on how their amino acids are arranged and folded. Protein structure is organized in levels. The primary structure is the amino acid sequence in a polypeptide chain. Amino acids are joined by peptide bonds, and the chain has two ends: the amino terminus, or N-terminus, and the carboxyl terminus, or...

protein folding

How Amino Acid Sequence Shapes Proteins

Proteins get their shape from the order of amino acids in a polypeptide chain. After a protein is made, the chain folds into a three-dimensional form that is needed for it to work. The way amino acids interact with one another guides this folding. Protein structure matters because proteins do many jobs in cells. They can speed up chemical reactions, help with immune defense, store materials, carry substances, send cell signals, support movement, and provide structure. A protein usually works...

protein families

Protein Families and Superfamilies

Protein families and superfamilies group proteins with shared features. These groups help scientists organize proteins by common structure, function, or evolutionary history. The classification can show how related proteins are connected across different organisms. A protein family usually includes proteins that are closely related. A superfamily is a broader group that can include several families with more distant relationships. These categories help explain why some proteins share similar...

conservation of protein domains

Protein Domains Shared Across Proteins

Protein domains are shared structural and functional parts of proteins. A domain is a region that can often be found in more than one protein, even when the full proteins are different. This conservation means that a protein domain may keep a similar shape or role across related proteins. Because of that, scientists can compare proteins by looking for domains that stay the same. Conserved domains help reveal how proteins are related and how they may work. The topic of protein domain...

globular and fibrous proteins

Protein Shapes: Globular vs Fibrous

Proteins can have globular or fibrous shapes, and these shapes help explain how they work in the body. Globular proteins are compact and usually fold into rounded forms. Fibrous proteins are long, extended molecules that often provide support and structure. The shape of a protein is tied to its function. Globular proteins often take part in chemical jobs in cells, while fibrous proteins are better suited for strength and stability. These structural differences make the two groups easy to...

intrinsically disordered proteins

Flexible Protein Regions and Disorder

Intrinsically disordered proteins have flexible regions that do not settle into one fixed shape. Instead, these proteins can remain dynamic and change form as they move through the cell. This flexibility is an important part of their structure and function. Many proteins need a stable folded shape to work properly. Intrinsically disordered proteins are different because they may lack a single rigid structure under normal conditions. Their shifting shape can help them take part in cell...

protein complex assembly

Protein Complex Formation and Function

Protein complex formation explains how proteins join together to carry out specific jobs in cells. These groups are called protein complexes, and they can form in more than one way. Some complexes are homomeric, which means they contain the same kind of protein subunit. Others are heteromeric, which means they contain different protein subunits. The assembly process helps show how protein shape and subunit choice affect function. When proteins combine, the resulting complex can behave...

conjugated proteins

Conjugated Proteins and Their Bound Groups

Conjugated proteins are proteins that include a nonprotein part called a prosthetic group. This added group helps give the protein its full structure or function. The video explains how the protein part and the bound group work together. Several common types of conjugated proteins are named by the kind of group attached. Nucleoproteins contain nucleic acids. Glycoproteins contain carbohydrate groups, and lipoproteins contain lipid groups. Other examples include phosphoproteins, which have...

amyloid fibrils

Amyloid Fibrils and Protein Aggregation

Amyloid fibrils are protein aggregates with a very specific structure. They are made when proteins misfold and stick together in long, ordered fibers. This structure makes them different from many other protein clumps. Amyloid fibrils are important in biology because they are linked to protein aggregation. Protein aggregation means proteins build up into groups instead of staying properly folded and separate. In many cases, this process is associated with disease and abnormal cell function. <br...

key terms and concepts

Explore protein folding from amino acid sequence to alpha-helices, beta-pleated sheets, tertiary shape, and quaternary protein subunits.

Protein Folding Levels and Bonds | JoVE K12

cell biology

JoVE Core Cell Biology illustrates complex cellular processes in easy-to-understand yet comprehensive animated video lessons. This collection focuses on the essential components and functions of cells, including organelles and membranes, cellular transport, and cell energetics. It is complemented by scientist-in-action videos that demonstrate the application of cell biology in real-world research experiments.

Characteristics of Life

Biology is a natural science that studies life and living organisms, including their structure, function, development, interactions, evolution, ...

https://cloudfront.jove.com/files/media/science-education/science-education-thumbs/10647.jpg

Cell Structure

Background
Cells represent the most basic biological units of all organisms, whether it be simple, single-celled organisms like bacteria, or large, ...

Visualizing Onion and Cheek Cells
ExpandImmediately before the experiment, wash and peel onion bulbs for the class.
Remove the entire brown outer skin and ...

Visualizing Onion and Human Cells
ExpandIn this experiment you will prepare different types of cells from a plant and animal, onion and human ...

What are Cells?

Cell Diversity

The concept of a cell started with microscopic observations of dead cork tissue by Robert Hooke in 1665. Hooke coined the term &#34;cell&#34; based on the ...

Cytoplasm

The cytoplasm consists of organelles and a framework of protein scaffolds called the cytoskeleton suspended in an aqueous solution, the cytosol. The ...

The Nucleus

The nucleus is a membrane-bound organelle that acts as a control center in a eukaryotic cell. It contains chromosomal DNA, which controls gene expression ...

The Central Dogma

The DNA Helix

Nucleic Acids

DNA as a Genetic Template

Structure of a Gene

A gene is the fundamental unit of heredity. Every individual has two copies of each gene, one inherited from each parent. Although most people contain the ...

Chromosome Structure

Base-pairing and DNA Repair

What is Gene Expression?

A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised&#160; of nucleotides and proteins are ...

RNA Structure

The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form ...

Protein Families

Types of RNA

Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse ...

Conservation of Protein Domains

Transcription

Transcription is the synthesis of RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. ...

Globular and Fibrous Proteins

Translation

Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes ...

Intrinsically Disordered Proteins

Ribosomes

Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that ...

Protein Complex Assembly

Protein and Protein Structures

Conjugated Proteins

Proteins: From Genes to Degradation

Amyloid Fibrils

What are Proteins?

Proteins are polymers of amino acids linked together by peptide bonds. Proteins and polypeptides are interchangeably used to refer to long chains of amino ...

Ligand Binding Sites

Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular ...

Protein-Protein Interfaces

Protein Folding

Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to ...

Conserved Binding Sites

Cofactors and Coenzymes

Enzymes are proteins made of amino acids. The functional group of each constituent amino acid catalyzes a wide variety of chemical reactions via ionic ...

Cooperative Allosteric Transitions

Protein Kinases and Phosphatases

GTPases and their Regulation

Covalently Linked Protein Regulators

protein-complexes-with-interchangeable-parts

Protein Complexes with Interchangeable Parts

Mechanical Protein Function

Structural Protein Function

Protein Networks

Construct an explanation based on evidence for how the structure of DNA determines the structure of proteins, which carry out the essential functions of life through systems of specialized cells. [Assessment Boundary: Assessment does not include identification of specific cell or tissue types, whole body systems, specific protein structures and functions, or the biochemistry of protein synthesis.]

Levels of Organization

Biological organization is the classification of biological structures, ranging from atoms at the bottom of the hierarchy to the Earth&#x27;s biosphere. ...

Animal and Plant Cell Structure

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structural-organization-of-the-human-body-an-overview

Structural Organization of the Human Body: An Overview

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Overview of Human Digestion

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Anatomy of the Intestines

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Accessory Organs

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Lipid Digestion

Lipids are large molecules that are generally not water-soluble. Since most of the digestive enzymes in the human body are water-based, there are specific ...

Protein Digestion

Protein digestion begins in the stomach, where the highly acidic environment can easily disrupt protein structure by exposing the peptide bonds of ...

Carbohydrate Digestion

Carbohydrate digestion and metabolism break down simple and complex carbohydrates from food into saccharides (i.e., sugars) for the body to use as energy. ...

What is a Nervous System?

Overview

The nervous system is the collection of specialized cells responsible for maintaining an organism&rsquo;s internal environment and coordinating ...

The Parasympathetic Nervous System

Overview

The parasympathetic nervous system is one of the two major divisions of the autonomic nervous system. This parasympathetic system is responsible ...

The Sympathetic Nervous System

Overview

The sympathetic nervous system&mdash;one of the two major divisions of the autonomic nervous system&mdash;is activated in times of stress. It ...

Oogenesis

In human women, oogenesis produces one mature egg cell or ovum for every precursor cell that enters meiosis. This process differs in two unique ways from ...

What is a Sensory System?

Sensory systems detect stimuli&mdash;such as light and sound waves&mdash;and transduce them into neural signals that can be interpreted by the nervous ...

Fertilization

During fertilization, an egg and sperm cell fuse to create a new diploid structure. In humans, the process occurs once the egg has been released from the ...

What is the Skeletal System?

Overview

The adult human skeleton comprises 206 bones that are connected through cartilage, tendons, and ligaments. The skeleton provides a rigid ...

an-introduction-to-the-zebrafish-danio-rerio

An Introduction to the Zebrafish: Danio rerio

Zebrafish (Danio rerio) are small freshwater fish that are used as model organisms for biomedical research. The many strengths of these fish include their ...

Physiology of the Circulatory System

Homeostasis
Conditions in the external environment of an organism can change rapidly and drastically. To survive, organisms must maintain a fairly ...

Anatomy of the Circulatory System

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Measuring Blood Pressure
ExpandTo prepare for the blood pressure exercise, simply place the appropriate number of alcohol swabs, sphygmomanometers, and ...

Anatomy of the Heart

The human heart is made up of three layers of tissue that are surrounded by the pericardium, a membrane that protects and confines the heart. The ...

Measuring Circulatory System Function in Humans
ExpandBefore starting the experiment go to the front of the room and collect an alcohol swab, a ...

Blood Flow

Blood is pumped by the heart into the aorta, the largest artery in the body, and then into increasingly smaller arteries, arterioles, and capillaries. The ...

What Are Osmoregulation and Excretion?

Organisms must keep bodily fluids at a constant temperature and pH while maintaining specific solute concentrations in order to support life functions. ...

Blood Withdrawal I

Source: Kay Stewart, RVT, RLATG, CMAR; Valerie A. Schroeder, RVT, RLATG. University of Notre Dame, IN
Blood collection is a common requirement for ...

Kidney Structure

The kidneys are two large bean-shaped organs located in the upper abdomen. They filter the blood several times a day to remove toxins and rebalance water ...

Blood Withdrawal II

Source: Kay Stewart, RVT, RLATG, CMAR; Valerie A. Schroeder, RVT, RLATG. University of Notre Dame, IN
The collection of blood from mice and rats for ...

What is the Immune System?

Overview

The immune system comprises diverse biological structures and processes that protect the body from disease. These processes can be classified ...

Bone Remodeling

Bone remodeling is a continuous and balanced process of bone resorption by osteoclasts and bone formation by osteoblasts. In adults, it helps maintain ...

Spermatogenesis

Spermatogenesis is the process by which haploid sperm cells are produced in the male testes. It starts with stem cells located close to the outer rim of ...

Bone Structure

Within the skeletal system, the structure of a bone, or osseous tissue, can be exemplified in a long bone, like the femur, where there are two types of ...

Breathing

The process of breathing, inhaling and exhaling, involves the coordinated movement of the chest wall, the lungs, and the muscles that move them. Two ...

Develop and use a model to illustrate the hierarchical organization of interacting systems that provide specific functions within multicellular organisms. [Clarification Statement: Emphasis is on functions at the organism system level such as nutrient uptake, water delivery, and organism movement in response to neural stimuli. An example of an interacting system could be an artery depending on the proper function of elastic tissue and smooth muscle to regulate and deliver the proper amount of blood within the circulatory system.] [Assessment Boundary: Assessment does not include interactions and functions at the molecular or chemical reaction level.]

HS-LS1-2

What is Homeostasis?

Maintaining homeostasis requires that the body continuously maintain its internal conditions. Each physiological condition has a particular set point, ...

Negative and Positive Feedback

Homeostatic Imbalance

Homeostasis is the maintenance of a stable internal environment within the body, which is crucial for the proper functioning of cells, tissues, organs, ...

pH Homeostasis

Acid-base homeostasis is essential for maintaining normal physiological activities in humans. The pH of various body fluids is strictly regulated because ...

Positive and Negative Feedback Loops

Animal organs and organ systems constantly adjust to internal and external changes through a process called homeostasis (&#34;steady state&#34;). Examples ...

Cell Signaling Feedback Loops

Positive and negative feedback loops are crucial for regulating biological signaling systems. These feedback loops are processes that connect output ...

Regulation of Hormone Secretion

Hormone secretion is regulated by different types of signals, including neural, humoral, and hormonal stimuli.
Neural stimuli are triggered by the ...

Plan and conduct an investigation to provide evidence that feedback mechanisms maintain homeostasis. [Clarification Statement: Examples of investigations could include heart rate response to exercise, stomate response to moisture and temperature, and root development in response to water levels.] [Assessment Boundary: Assessment does not include the cellular processes involved in the feedback mechanism.]

HS-LS1-3

Protein Folding Levels and Bonds

Description

Transcript

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