Crop Gut Separation

Crop gut separation is a biological dissection technique used to isolate the crop, a foregut storage compartment, from the downstream gut for independent examination. Under a stereomicroscope, the digestive tract is exposed and gently teased apart, with the connection between the crop and gut carefully severed while preserving each tissue’s structure and contents. This separation enables researchers to compare food storage, digestion, absorption, and tissue-specific physiology, as well as examine microbial communities or chemical contents in distinct digestive regions. In biology, the method supports studies of nutrition, gut function, host-microbe interactions, and digestive responses to environmental or experimental conditions.

Crop Gut Separation - Related Videos

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JoVE Journal - Biology
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High-Throughput, In-Field Screening of Photosynthetic Efficiency in Crop Plants Using an Autonomous Robot

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2026

This manuscript describes a non-destructive, high-throughput approach for autonomous field measurements of photosystem II quantum efficiency, spectral reflectance, and plant architecture, enabling large-scale canopy photosynthesis phenotyping in agronomic and breeding field trials.

Research

JoVE Journal - Biology

Extracting DNA from the Gut Microbes of the Termite (Zootermopsis Angusticollis) and Visualizing Gut Microbes

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Cited by 18 •

2007

This video illustrates the technique for extracting DNA from the species of microbes resident in the termite hindgut. The preparation of a wet mount slide, which is useful for visualizing the gut microbial community is also illustrated, and a tour through the species-rich gut environment is given.

Quantification of Colony-Forming Units of Gut-Associated Bacteria in Drosophila Flies

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2025

Source: Dodge, R., et al. Fast Colony Forming Unit Counting in 96-Well Plate Format Applied to the Drosophila Microbiome. J. Vis. Exp. (2023)This video demonstrates the quantification of colony-forming units (CFUs) of gut-associated bacteria in Drosophila flies using a serial dilution and plating approach. Homogenized fly samples containing gut bacteria are serially diluted, plated on agar, and incubated to allow colony growth. Images of the plates are then analyzed using software to align,...

How to Create Conditioned Taste Aversion for Grazing Ground Covers in Woody Crops with Small Ruminants

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Cited by 4 •

2016

Feeding behavior preferences in livestock can be modified to implement a grazing management plan in woody crops. Here, we present a protocol to show a lithium chloride dose after eating a new plant that induces conditioned taste aversion.

Investigating the Human Gut Microbial Activity on Exopolysaccharides

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2026

Source: Hu, Y. et.al., Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems. J. Vis. Exp. (2019)This video demonstrates the analysis of short-chain fatty acid production by human gut microbiota in response to exopolysaccharides. This highlights microbial fermentation products separation and quantification using gas chromatography. The results reveal that exopolysaccharides modulate microbial metabolites that influence host-pathogen...

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