Drug Penetration Prediction

Drug penetration prediction is the estimation of how effectively a compound crosses biological barriers and reaches a target tissue, a key step in understanding exposure, efficacy, and toxicity. It combines a drug’s physicochemical properties, such as lipophilicity, molecular size, and ionization, with barrier characteristics, including membrane permeability, tight junctions, transport proteins, and blood flow, to model movement from one compartment to another. In biology and pharmacology, these predictions help prioritize compounds, anticipate tissue distribution, and guide experimental studies of barriers such as the blood-brain barrier. They can reduce screening demands while highlighting cases that require in vitro or in vivo validation.

Drug Penetration Prediction - Related Videos

Research

JoVE Journal - Immunology and Infection

An In Vitro Caseum Binding Assay that Predicts Drug Penetration in Tuberculosis Lesions

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Cited by 24 •

2017

Here we describe a rapid equilibrium dialysis (RED) method to measure drug binding to caseum from pulmonary tuberculosis lesions and cavities. The protocol is also used with a foamy macrophage-derived matrix that is an effective surrogate to caseum.

Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers

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Cited by 5 •

2022

This protocol describes the synthesis of cyclic cell-penetrating peptides with aromatic cross-links and the evaluation of their permeability across biological barriers.

RNA Secondary Structure Prediction Using High-throughput SHAPE

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Cited by 16 •

2013

High-throughput selective 2' hydroxyl acylation analyzed by primer extension (SHAPE) utilizes a novel chemical probing technology, reverse transcription, capillary electrophoresis and secondary structure prediction software to determine the structures of RNAs from several hundred to several thousand nucleotides at single nucleotide resolution.

A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds

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Cited by 29 •

2016

We present a three-dimensional (3D) lung cancer model based on a biological collagen scaffold to study sensitivity towards non-small-cell-lung-cancer-(NSCLC)-targeted therapies. We demonstrate different read-out techniques to determine the proliferation index, apoptosis and epithelial-mesenchymal transition (EMT) status. Collected data are integrated into an in silico model for prediction of drug sensitivity.

Shifting Zebrafish Lethal Skeletal Mutant Penetrance by Progeny Testing

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Cited by 8 •

2017

The goal of this protocol is to alter the penetrance of lethal skeletal mutant phenotypes in zebrafish by selective breeding. Lethal mutants cannot be grown to adulthood and bred themselves, therefore this protocol describes a method for tracking and selecting penetrance through multiple generations by progeny testing.

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