Sample Visualization

Sample visualization is the process of making biological structures, cells, tissues, or other specimens visible and interpretable for scientific analysis. It works by preparing a sample to preserve its relevant features, then using contrast, stains, fluorescent labels, or optical methods to distinguish components and convert their interactions into an image. In biology, visualization supports cell identification, tissue organization studies, developmental research, and investigation of disease-related changes. Careful control of fixation, labeling, imaging conditions, and image interpretation improves data quality, enabling researchers to compare samples, document spatial patterns, and connect microscopic structure with biological function.

Sample Visualization - Related Videos

Research

JoVE EoE - Bacterial Pathogenesis and Host Interactions

Visualization of Pseudomonas aeruginosa in Sputum Samples from Cystic Fibrosis Patients

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2026

Source: Jackson, L., et al. Visualization of Pseudomonas aeruginosa within the Sputum of Cystic Fibrosis Patients. J. Vis. Exp. (2020)This video demonstrates the in situ visualization of Pseudomonas aeruginosa within chemically cleared cystic fibrosis sputum using fluorescent labeling and confocal microscopy to reveal bacterial localization and biofilm structure.

In Situ Visualization of the Phase Behavior of Oil Samples Under Refinery Process Conditions

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Cited by 1 •

2017

This article describes a setup and method for the in situ visualization of oil samples under a variety of temperature and pressure conditions that aim to emulate refining and upgrading processes. It is primarily used for studying isotropic and anisotropic media involved in the fouling behavior of petroleum feeds.

A Method for Sample Preparation to Visualize Biofilm Forming Bacteria on Fungal Hyphae

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2025

This video describes a method to grow and qualitatively analyze bacterial biofilms on fungal hyphae using microscopy. Bacterial biofilms frequently form on fungal surfaces and involve numerous bacterial-fungal interaction processes, such as metabolic cooperation, competition, or predation.

Research

JoVE Journal - Medicine
Free Sample

The Bovine Lung in Biomedical Research: Visually Guided Bronchoscopy, Intrabronchial Inoculation and In Vivo Sampling Techniques

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Cited by 18 •

2014

This article describes bronchoscopic techniques in the bovine lung under experimental conditions, i.e. bronchoscopically guided inoculation, bronchoalveolar lavage, bronchial brushing, and transbronchial lung biopsy.

Research

JoVE Journal - Biochemistry
Free Sample

An All-in-one Sample Holder for Macromolecular X-ray Crystallography with Minimal Background Scattering

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Cited by 4 •

2019

A novel sample holder for macromolecular X-ray crystallography along with a suitable handling protocol is presented. The system allows crystal growth, crystal soaking and in situ diffraction data collection at both, ambient and cryogenic temperature without the need of any crystal manipulation or mounting.

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