Immunofluorescent Markers

Immunofluorescent markers are fluorescently labeled antibodies or molecular probes used to identify specific proteins, cells, or structures in fixed biological samples. They work through selective binding between an antibody and its target, while attached fluorophores emit light at defined wavelengths when illuminated, allowing signals to be detected by fluorescence microscopy. In neuroscience, these markers can reveal neuronal and glial populations, subcellular components, and changes in protein distribution within brain tissue or cultured cells. Single- and multi-label staining supports cellular mapping, developmental studies, disease research, and analysis of neural circuits and tissue organization.

Immunofluorescent Markers - Related Videos

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JoVE Journal - Biology
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Multiplexed Immunofluorescence Assay for Spatial Assessment of Senescence Markers in vivo

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2026

Multiplexed immunofluorescence enables sequential labeling of multiple antibody markers within a single tissue section to support spatial analysis of tissue architecture and cell populations. Here, a workflow for multiplex detection of senescence-associated, structural, and immune markers is presented, including manual and automated slide preparation, iterative imaging, and single-cell analysis using digital pathology software.

Education

JoVE Science Education - Advanced Biology

Immunofluorescence Microscopy: Immunofluorescence Staining of Paraffin-Embedded Tissue Sections

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2023

Source: Thomas Chaffee1, Thomas S. Griffith2,3,4, and Kathryn L. Schwertfeger1,3,4 1 Department of Lab Medicine and Pathology, University of Minnesota, Minneapolis, MN 55455 2 Department of Urology, University of Minnesota, Minneapolis, MN 55455 3 Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455 4 Center for Immunology, University of Minnesota, Minneapolis, MN 55455 Pathologic analyses of tissue sections can be used to obtain a better understanding of normal tissue...

Microscopic Analysis of Synapses in Mouse Hippocampal Slices Using Immunofluorescence

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2025

Source: McLeod, F., et al. Evaluation of Synapse Density in Hippocampal Rodent Brain Slices. J. Vis. Exp. (2017).This video demonstrates a method for visualizing synaptic markers in hippocampal brain slices using confocal immunofluorescence analysis. The slices are immunostained with primary antibodies targeting presynaptic and postsynaptic markers, followed by fluorophore-conjugated secondary antibodies. The labeled markers are then visualized using confocal microscopy to evaluate the synaptic...

Three-dimensional Confocal Analysis of Microglia/macrophage Markers of Polarization in Experimental Brain Injury

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Cited by 51 •

2013

A way to gain new insights into the complexity of the brain inflammatory response is presented. We describe immunofluorescence-based protocols followed by three-dimensional confocal analysis to investigate the pattern of co-expression of microglia/macrophage phenotype markers in a mouse model of focal ischemia.

Immunofluorescence Microscopy

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2023

A fluorescence microscope uses fluorescent chromophores called fluorochromes, which can absorb energy from a light source and then emit this energy as visible light. Fluorochromes include naturally fluorescent substances (such as chlorophylls) and fluorescent stains that are added to the specimen to create contrast. Dyes such as Texas red and FITC are examples of fluorochromes. Other examples include the nucleic acid dyes 4’,6’-diamidino-2-phenylindole (DAPI), and acridine orange. The...

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